Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq170146 156 6e-33 seq236343 143 4e-29 seq62470 116 5e-21 seq62469 87.8 2e-12 >seq170146 Length=2682 Score = 156 bits (172), Expect = 6e-33 Identities = 279/398 (70%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 47773 ACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGT-TCTTCTTGTTGAAGCAT 47831 ||||||||||| || || || || || || |||| ||||| | |||| | |||||||| Sbjct 393 ACAGAATATTGTTTGCCGGTAGCGATGACGTAATCCACAGGTGTATTCT-GCTGAAGCAT 335 Query 47832 TAACCACATAGCCTCG-ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGAT 47890 | |||| | ||| |||||||| | || || |||||||| || | ||||| | || Sbjct 334 CATCCAC-TGCATTCGGACATAATCCTTCGCGTGCCCCCAGTCTCGCAACGCATCCATAT 276 Query 47891 TTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCT 47950 | |||| || ||||| | | |||| |||| | | || ||| ||||||| Sbjct 275 TCCCTAAGTACAAACATTTATCAAGCCCTTGAGAGGTATTTGCCAACCCTCGGGTAATCT 216 Query 47951 TACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTAC 48010 | || |||||||| || |||||||| | ||||| ||||||||||| | ||| ||| | | Sbjct 215 TGCGCGTTACAAATGTCTCACCACGCCGAGGAGACTCATGATTAAACAAAATCCCATTGC 156 Query 48011 AGGCATACATTCCGTATGATTCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTT 48068 | ||||||| ||| || | || |||||||| | || ||||| || |||| | ||| Sbjct 155 ACGCATACAATCCATAGGCCTCTCGATAGTTAACCGTA--ATCCAATAGGCATACAATTT 98 Query 48069 TGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTG 48128 |||| | | || || || || || ||||| || ||| |||| | || || ||||| Sbjct 97 TGCACAAGCGTACGGTGAGCGCGGGTAGAACGGAGTGCTCTCCCTTTGAGGGACTTCTTG 38 Query 48129 CACCTTACCATAAAGTTCACTG--GTGGATGCTTGATA 48164 ||| || | ||| | ||| |||||||||||||| Sbjct 37 CAC--TAACCCAAATAACTCTGATGTGGATGCTTGATA 2 >seq236343 Length=1092 Score = 143 bits (158), Expect = 4e-29 Identities = 244/350 (70%), Gaps = 8/350 (2%) Strand=Plus/Minus Query 47819 CTTGTTGAAGCATTAACCACATAGCCTCG--ACATAATCTCTGGCATGTCCCCAGTCACG 47876 ||||||| ||||| ||||| | || | || |||||| | || || ||||||||||| Sbjct 402 CTTGTTGTAGCATCAACCA--TTGCATTTTTACGTAATCTTTCGCGTGCCCCCAGTCACG 345 Query 47877 AAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAA 47936 | ||| | ||| || | || | ||| || | || | | ||| ||| Sbjct 344 TAAAGCACTTAAATTACCCAAGTAAAGACAATCATCTACTCCGTGCGCTATTTGCGCTAA 285 Query 47937 TGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAA 47996 | | | |||| ||||| |||||||| ||||| || | ||| ||||| || |||||||| Sbjct 284 TCCGCGAGTAACTTTACGCGTTACAAACGTTTCCCCTCTTCTAGGAGACTCGTGATTAAA 225 Query 47997 AAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACTATCCAG 48054 | ||| ||| |||||||| | | || || ||||||||||| || | || ||||| Sbjct 224 TAAAATTCCATTACAGGCAAATAAACCATAGGATTCACGATAATTTACCGTA--ATCCAA 167 Query 48055 TACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTC 48114 ||| | || ||||| ||||| | |||||||| |||||||| ||||| || | || | Sbjct 166 TACGCGTATAGTTTCGCAACTGCGTAAGGAGAGCGTGGATAAAAAGGCGTATTTTCATTT 107 Query 48115 TGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATA 48164 ||||| || ||||| || |||||||| || ||| | ||||||||| Sbjct 106 TGTGGGATCGTCTGCACTTTCCCATAAAGCTCGGAGGTTGCTGCTTGATA 57 >seq62470 Length=1405 Score = 116 bits (128), Expect = 5e-21 Identities = 242/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 47031 CCATATAGGTTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCC 47090 ||||| || || || ||||| || ||| || || |||| |||| | |||| || Sbjct 649 CCATAAAGATTGGTTGGCATAGCCGATATATAATCAACACCATGTTGCTTACGGTAAGCT 590 Query 47091 TGACACATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGA 47150 || |||| || ||||| || || || ||||| ||||| | || || | || || ||| Sbjct 589 TGGCACAGTTTAATACCCGCTATTTTCGCAATCGCATACCATTCGTTTGTTGGCTCTAGA 530 Query 47151 GGACCACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAG 47210 | ||| ||| | | | ||| | || |||||||| || ||||||||||| || Sbjct 529 GCACCTTTCAACAATTCGTTTTCTTTGATCGGTTGTTCTGCAAACTTTGGATAAATACAA 470 Query 47211 GAAGAACCAAGAAATAAAAGTTTCTTAACACCAAACTTACGTGCAGAATGAATGATGTTT 47270 || || ||||| || ||||| || | ||||| | | | ||| | | ||||| || Sbjct 469 GATGAGCCAAGGAACAAAAGCTTATCAACACTCACATCAAATGCGGCTTTGATGATATTC 410 Query 47271 GATTGAATCATCAAATTATCATA-GATGAAGTGTCCGGGATAATCCTTATTAGCACCAAT 47329 | || |||||||||||||||||| | || | || || | | ||| ||| ||| Sbjct 409 GTTTCAATCATCAAATTATCATACAAAAAAACCGCAGGCATTGT-ATCATTCGCAAGAAT 351 Query 47330 ACCACCCACCTTTGCAGCAGC-AAGATAAACGTACTCAGGTTCATTGATTTGAAA 47383 |||||| ||||||||||| || |||| |||| ||||| | ||| ||| ||| Sbjct 350 ACCACCAACCTTTGCAGCCGCTAAGA-AAACTGCATCAGGCTTATTTTTTTCAAA 297 >seq62469 Length=843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 48390 GTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATA 48449 ||||||||| | ||||||| ||||| | |||||| |||||||||||| ||||| Sbjct 424 GTGATCAATCCGCGCCGTATTAAACAAAGATGTCCGACGTTTAATACCATGAACTTCATA 365 Query 48450 CCCCTT-TTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGA 48508 || || || || ||||| | ||||||| || | || ||||| || || | |||||||| Sbjct 364 GCCTTTATTTAACAAGAACT-CTGCTAAATAAGCCCCGTCTTGGCCCGTTACACCAGTGA 306 Query 48509 TTAAAGC 48515 ||||||| Sbjct 305 TTAAAGC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663093495853120