Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28030 122 1e-22 seq182767 102 1e-16 seq124498 89.7 6e-13 >seq28030 Length=5412 Score = 122 bits (134), Expect = 1e-22 Identities = 308/455 (68%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||| | ||||| | | || |||||| ||||| || || |||||||||||||| Sbjct 1704 TCCTTTGGAGAGCGAATCATAGCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCC 1645 Query 65128 TTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || ||| | |||| ||| |||||||||| || |||||||| || || ||||| || Sbjct 1644 TT-TGCTTCCATTTTCTGGCTGAAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAA 1586 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGC-TCTTCAAGA 65245 ||||| ||||| || || || || || ||| || |||||| || | | ||| ||| Sbjct 1585 CGAACTCATTTCTCGTGACGAAGGGCTTCACACAGACTTTGCC-TGCCTCATGTTC-AGA 1528 Query 65246 CTTTGCG-TAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 | | || ||||| ||| || || ||| | ||||| ||| || |||| | Sbjct 1527 CATCTCGCTAATAAGCCCTCTGTGGAGCGGATCACGGAAATCGTTCGAGATGCCGTTGCG 1468 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCAC-TCCCATGTAATCTCATCGGTATGAACTCTGA 65363 || |||| | |||| || || || | |||| || | | |||| ||||| | ||| Sbjct 1467 ATCGAGAGCGAGTTCCTCACAGAGGCTCTTCCCGTGCGA-ATGCTCGGAATGAATTGTGA 1409 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCC 65423 ||| ||||||| | | ||| ||||||| ||||| | || | | |||| Sbjct 1408 TTCCATGGTGCAGTACATCAAATTTGTCGCGGATCGACTCCTTGTA-GAGCTTGACTGCC 1350 Query 65424 AC-CCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGA 65482 | || | || | || || ||||||||||||||||| ||| ||| ||||| | Sbjct 1349 CCAAGATCTACAATAATGAAAACCCCTTTGACTTTATGGAAAATATTTCCCTGGATGGAA 1290 Query 65483 AGACCAACTTCTTTGAGAAGCGAGTTGGGGACTAT 65517 |||| ||||||||||||||| ||| || || ||| Sbjct 1289 AGACAAACTTCTTTGAGAAGAAAGTGGGAGAATAT 1255 >seq182767 Length=2084 Score = 102 bits (112), Expect = 1e-16 Identities = 367/566 (65%), Gaps = 21/566 (4%) Strand=Plus/Plus Query 76364 GGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATG 76423 ||| |||||||||| | |||||| |||| | | | || | ||||||| ||| | Sbjct 1426 GGTCCCTATGAGACCTACTCGGGTTCCCCCGTGAGCAAGGGCCTCCTTCAGTACGATCTC 1485 Query 76424 TGGGAAG--GTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAA 76479 ||||| | |||| || | || | || | |||||| | |||| |||| Sbjct 1486 TGGGATGACGTGACGCCCA-CTGATCTCTGGGACTGGGGCAAGATTAAGGCCTCCATCGC 1544 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 |||| || || || ||| ||| | |||| || ||||| || |||||||| ||||| Sbjct 1545 CGAGAGTGGCCTCCGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACA 1604 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 |||| |||| || || || || | || | ||||| | ||||||||| || | Sbjct 1605 AATCCTGGGGAACAACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGT 1664 Query 76600 CCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGG 76659 |||| | || ||||| | || ||| | || || || || |||| | | ||| Sbjct 1665 CCTCTCTGGGGAGTTCCAGGTCGTGAACCATCATCTTCTCCGGGATCTCACGGAACTTGA 1724 Query 76660 TCTCTGGTCCAAGGATATGAAGGA---TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 76716 ||||||| |||| |||||| | | | || | || ||| ||| ||||| Sbjct 1725 TCTCTGGGATGAGGACATGAAGCAAAATATAATTGCCAACAA---TGGATCCGTTCAAGG 1781 Query 76717 TATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGAT 76776 ||| | || || || ||||| |||||| ||||| || || ||||| ||| | Sbjct 1782 GATCCCGGAAATTCCTGATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATC----T 1837 Query 76777 GAAAGATG----TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAA 76832 | ||| | || || | ||||| |||||||| || ||||||||||| || || | Sbjct 1838 CACAGAAGACCATCCTTCAAATGGCTGCAGATCGAGGGGCGTTCATTGATCAGAGCCAGA 1897 Query 76833 GTATGAATCTATTCAT-GGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTAC 76891 || | ||| | ||| | | || ||||| ||| |||||| | || ||||| | || Sbjct 1898 GTCTCAATATTCACATCGCACAGCCCAACTATG-GAAAGCTCACCTCCATGCACTTCTAT 1956 Query 76892 GCGTGGAAACAGGGGCTCAAAACCGG 76917 | |||||| | || |||||||| || Sbjct 1957 GGGTGGAAGCTTGGACTCAAAACAGG 1982 >seq124498 Length=1304 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||| ||||| || |||||||| |||||||||||||| ||| ||| || ||| || Sbjct 259 GAGACGGGAACGCCTTATATGCTCTACAAGGATGCTTGCAACCGAAAGTCCAATCAACAG 318 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 || | || || || || |||| ||||| |||||||||||| | ||||||| Sbjct 319 AACCTAGGCACCATTAAATGCTCCAATCTATGCACGGAAATTGTGGAGTACA 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594417355854080