Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq214504 448 2e-121 seq76541 333 1e-86 seq287546 145 3e-30 >seq214504 Length=2501 Score = 448 bits (496), Expect = 2e-121 Identities = 834/1217 (69%), Gaps = 12/1217 (1%) Strand=Plus/Minus Query 51023 CCGTCCTTTTCCAGAACCTTGCGGGTGTAGCTGTTCGCAAAGACTGGTTCGATGCCGGAT 51082 ||||| |||| ||||||||| || || || | || || || |||||||| || Sbjct 1939 CCGTCTTTTTGCAGAACCTTACGTGTATAAGAATATGCGAACACAGGTTCGATACCACTC 1880 Query 51083 GACACGTTCCCGGCGTAGAGGCTGATGGTGCCGGTCGGCGCGATAGAGGTCAGCAGGGCG 51142 || ||||| || || || || || || || || || |||||||| |||||||| || Sbjct 1879 GATACGTTGCCTGCATAAAGCGATATCGTCCCTGTTGGTGCGATAGATGTCAGCAGCGCA 1820 Query 51143 TTCCGAATACCATGTTCACGGATGGCGTCACGCACATCTTGATCCATGCTCATCATGTTC 51202 || |||||||| | |||| || || ||||||||||| |||||| |||||| | Sbjct 1819 TTGCGAATACCTTTTTCAGAAATCGCATCACGCACATCCGCATCCATTTCCATCATCGTT 1760 Query 51203 TCACCGGCCAGATACTTGTCAGCATCAAACAGCGGGAACGCACCCTTCTCTTTGGCGAGA 51262 ||| ||| || | ||| ||| | | ||||| || ||||| || || | | Sbjct 1759 TCAATGGCAAGGAATGCGTCTTTGTCATATAATGGGAAAGCGCCCTTTTCAGCTGCTAAA 1700 Query 51263 TCCACGGACCCAAGATAAGCCGAACGGGCAATCTGGTGCATGATGTCATCGGTCATGCTG 51322 || | || | | ||| || || || |||| ||| ||| || ||||| || | Sbjct 1699 TCAGCAGATGCTAAATAGGCAGAGCGCGCAACGCGGTTCATCCAATCCTCGGTGATCTTT 1640 Query 51323 GCCGCGTCATCGGTGCCATAGGTCAGGCCCAACATGATCAGCGCATCGGCCAGACCGGTG 51382 || ||||| || | |||||| | || | ||| | || |||||||||| ||| || Sbjct 1639 GCAGCGTCTTCCGAGCCATAACGTTGACCAACCATCAGCAATGCATCGGCCAAACCCGTT 1580 Query 51383 ACACCCAGACCAAGGCGGCGTTTGTCGTGAGCCTCTTTGTCTTGGGCGGGCAGTGGGAAC 51442 ||||||| ||| | ||||||||| | || || |||| |||| || || || || Sbjct 1579 ACACCCAAACCGATGCGGCGTTTTGCATGTGCTTCTTGCGCTTGCGCATCCAACGGAAAG 1520 Query 51443 TTGGACGTGTCCACCACATTGTCCATCATGCGGATGGCGGTGCGGACCAGCTTGTCCAGC 51502 || | ||||| |||||||||||||| || | || ||||| |||| | |||| Sbjct 1519 CGCGATGCATCCACGACATTGTCCATCATACGCACAGCTGTGCGCACCAAATCATCCAAT 1460 Query 51503 GCCTTCAGGTCGATGGTAGCGGCTTCGGTGAAGGCATACTTGACCATGCGGGCCATGTTG 51562 || | || | ||| | | || | || ||| |||| || || | |||| Sbjct 1459 GCATCTGTATCCAGATCAGCACCCTTCTCAAATGGATTCTTCACCAAACGTGCAAAGTTG 1400 Query 51563 ATCGAACCCAGAAGACAGGCACCGTAGGGTGGCAGGGGTTGTTCGCCGCAGGGGTTTGTG 51622 || || |||| | ||||||||| || ||||||| ||||| || || ||||||||||| Sbjct 1399 ATAGATCCCAACAAACAGGCACCATAAGGTGGCAATGGTTGCTCCCCACAGGGGTTTGTT 1340 Query 51623 GCCGCGATGACCTCGCAATAGTTCAGGTTGTTCCGGTTATTGATCCGGTCGATGAACAGG 51682 ||||| ||| ||||||||| | |||||||||| | |||||| ||||||||||| | Sbjct 1339 GCCGCAATGCTCTCGCAATAATGCAGGTTGTTCTTTTGATTGATACGGTCGATGAAAATC 1280 Query 51683 ACACCCGGCTCAGCAACATCATAGGT-GTGCTTCATCATGGCGTCCCACAATTCAGTGGC 51741 ||||| || || ||| |||||| || | || ||| || | ||| || || || Sbjct 1279 ACACCTGGTTCGGCATAATCATATGTCGCGCG-CATGATCTGATTCCATAAATCCAACGC 1221 Query 51742 GCGGACTCGGCTATACACCTTACCCTCAAACACCAGATCCCAC-ATCTCATCGGCCTCTT 51800 || | || | ||| | | || | ||||| ||| ||| | | | Sbjct 1220 ATTTACAGTTTTGTAAATTTTATCGCCGAATTTTAATTCCCAAGATCCGTTCG-CTTTTA 1162 Query 51801 TGGCCTTCATGAAAGCGTCGGTGATCAAGACGGACATGTTGAACATCCGCAGCCGGTTCG 51860 || | ||||||| | || |||||||| || || | ||||||||| |||| || || Sbjct 1161 CCGCTTCCATGAAATCATCTGTGATCAAAACCGATAGGTTGAACATGCGCAAACG---CG 1105 Query 51861 GATCCGACTTG----GCCGTGATGAAGTCTTTGATGTCGGGGTGATCGCAACGCATTGTT 51916 | | | |||| ||| ||| || | || | || || ||||| |||||||||||| Sbjct 1104 CA-CTGTCTTGTTTTGCCTCGATAAACTGTTCCACATCAGGATGATCACAACGCATTGTT 1046 Query 51917 GCCATCATCGCGCCACGGCGGGACCCGGCAGACATGATCGTGCGACACATCGCATCCCAG 51976 ||||||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 1045 GCCATCATCGCACCACGGCGAGACCCTGCTGACATAATCGTGCGGCACATTGCATCCCAA 986 Query 51977 ACATCCATGAAAGACAGGGGACCAGAAGCATCCGCAGCAACACCTTTGACGATTGCACCC 52036 ||||||||||| || || || || |||||||||| ||| ||||| || | || || Sbjct 985 ACATCCATGAATGAAAGTGGCCCGCTTGCATCCGCAGAAACGCCTTTTACAAAGGCTCCT 926 Query 52037 TTGGGGCGGATGGTGCTGAAGTCATAGCCGATGCCGCCGCCCTGTTGCATGGTCAGCGCA 52096 || ||||| | ||| ||| ||||| || || || || || || ||||| || |||||| Sbjct 925 TTCGGGCGCAACGTGGAGAAATCATACCCAATACCACCACCTTGCTGCATTGTAAGCGCA 866 Query 52097 GCTTCCTTCAGCATGTCGAAGATGCCGCCCATGTCGTCTGGCACGGTCCCCATGACAAAG 52156 |||||||||||||| ||||| || || ||||| ||| || | || ||||| ||||| Sbjct 865 GCTTCCTTCAGCATATCGAAAATACCACCCATCGTGTCGGGGATTGTGCCCATAACAAAA 806 Query 52157 CAGTTGAAGAGGGTGACATTTCGTCCAGTCCCGGCCCCGGCGGTGATCCGGCCAGCGGGC 52216 |||||||| | || ||| ||| | || || || || || | || || || || || Sbjct 805 CAGTTGAACAAAGTCACAGACCGTTCCGTTCCTGCACCTGCAATAATACGACCCGCTGGA 746 Query 52217 AGATACTTAAAATCTTC 52233 || | |||||||| || Sbjct 745 AGGAATTTAAAATCCTC 729 >seq76541 Length=11138 Score = 333 bits (368), Expect = 1e-86 Identities = 663/973 (68%), Gaps = 8/973 (1%) Strand=Plus/Plus Query 51250 CTCTTTGGCGAGATCCACGGACCCAAGATAAGCCGAACGGGCAATCTGGTGCATGATGTC 51309 |||||| || || || | ||| | ||||||| | ||||||| ||||| || Sbjct 4328 CTCTTTTGCCAGCTCAATCGACTCTTCATAAGCCCAGATAGCAATCTTCATCATGACTTC 4387 Query 51310 ATCGGTCATGCTGGCCGCGTCATCGGTGCCATAGGTCAGGCCCAACATGATCAGCGCATC 51369 ||| || | | | || || | | |||| || || |||| ||| | |||| || Sbjct 4388 ATCTGTGAAGTCCACAGCTTCTTTGCTGCCGTAACGCATTCCCAGCATAAACAGCAGGTC 4447 Query 51370 GGCCAGACCGGTGACACCCAGACCAAGGCGGCGTTTGTCGTGAGCCTCTTTGTCTTGGGC 51429 |||||||| || ||||||||||| | || ||||||| || |||| ||| || Sbjct 4448 AGCCAGACCTGTAACACCCAGACCCATACGACGTTTGTACATCGCTTCTTCACGTTGAGC 4507 Query 51430 GGGCAGTGGGAACTTGGACGTGTCCACCACATTGTCCATCATGCGGATGGCGGTGCGGAC 51489 ||| ||||| |||||||| | ||| ||| | | || | | || || || Sbjct 4508 TTCCAGAGGGAAACCAGACGTGTCGATCACTGAGTCAAGGAGACGAACCCCAGTCCGTAC 4567 Query 51490 CAGCTTGT-CCAGCGCCTTCAGGTCGATGGTAGCGGCTTCGGTGAAGG-CATACTTGA-C 51546 | |||| | ||||| | | || ||| ||| | | ||||||| ||| ||| | Sbjct 4568 C-GCTTCTTCCAGCTCGCTGTAATCAATGTCAGCCGAGCCTGTGAAGGGCATG--TGAGC 4624 Query 51547 CATGCGGGCCATGTTGATCGAACCCAGAAGACAGGCACCGTAGGGTGGCAGGGGTTGTTC 51606 ||| |||| ||| | || |||| | ||| |||||||| || |||| ||||| || Sbjct 4625 CATCATCGCCAAGTTCACTGATCCCAACAAACAAGCACCGTATGGAGGCAAAGGTTGCTC 4684 Query 51607 GCCGCAGGGGTTTGTGGCCGCGATGACCTCGCAATAGTTCAGGTTGTTCCGGTTATTGAT 51666 || || ||||| || || ||||| || || ||||||||| |||||| Sbjct 4685 ACCACATGGGTTCGTTGCTGCGATAGTTTCCACGGCGTGGAGGTTGTTCTCTGAATTGAT 4744 Query 51667 CCGGTCGATGAACAGGACACCCGGCTCAGCAACATCATAGGTGTGCTTCATCATGGCGTC 51726 ||||| ||||| | ||||| || ||||| || ||||||| | || |||||||| Sbjct 4745 GCGGTCAATGAAGATCACACCGGGTTCAGCGTAGTCGTAGGTGTTTTGAATAATGGCGTC 4804 Query 51727 CCACAATTCAGTGGCGCGGACTCGGCT-ATACACCTTACCCTCAAACACCAGATCCCACA 51785 ||||| || |||| | || | || ||| ||||| || || ||| ||||||||| Sbjct 4805 CCACAGCTCTTTGGCTTGAACG-GTCTCATAGACCTTGCCATCGAACTGAAGATCCCACT 4863 Query 51786 TCTCATCGGCCTCTTTGGCCTTCATGAAAGCGTCGGTGATCAAGACGGACATGTTGAACA 51845 || | || || || | ||| || | || || || || || | ||||| Sbjct 4864 CTTCGTTTGCGTCCACTGCTTCCATAAATGGATCTGTACACAGCACCGAAACATTGAAGT 4923 Query 51846 TCCGCAGCCGGTTCGGATCCGACTTGGCCGTGATGAAGTCTTTGATGTCGGGGTGATCGC 51905 |||| ||| | | |||||| ||||| ||||| || || | | ||| |||||||| | Sbjct 4924 TCCGAAGCAGAGTTGGATCCTGTTTGGCAGTGATAAAATCCATCACGTCAGGGTGATCAC 4983 Query 51906 AACGCATTGTTGCCATCATCGCGCCACGGCGGGACCCGGCAGACATGATCGTGCGACACA 51965 |||||||||| |||||||| || || ||||| || || |||||||| || || ||||| Sbjct 4984 AACGCATTGTCGCCATCATAGCCCCCCGGCGTGAGCCAGCAGACATAATGGTTTTACACA 5043 Query 51966 TCGCATCCCAGACATCCATGAAAGACAGGGGACCAGAAGCATCCGCAGCAACACCTTTGA 52025 ||| |||||| || | |||||| || || || |||||||| | | ||||| || | Sbjct 5044 TCGTATCCCACACGTTCATGAATGAGAGAGGGCCAGAAGCGTTACTTTCGACACCCTTCA 5103 Query 52026 CGATTGCACCCTTGGGGCGGATGGTGCTGAAGTCATAGCCGATGCCGCCGCCCTGTTGCA 52085 | | |||||| || |||||||| ||| |||||| || ||||| || || || || |||| Sbjct 5104 CCAATGCACCTTTTGGGCGGATTGTGGAGAAGTCGTAACCGATCCCACCACCTTGCTGCA 5163 Query 52086 TGGTCAGCGCAGCTTCCTTCAGCATGTCGAAGATGCCGCCCATGTCGTCTGGCACGGTCC 52145 | || || ||||||||||| ||||| |||||||| || | | | ||| || || || | Sbjct 5164 TTGTGAGTGCAGCTTCCTTGAGCATATCGAAGATACCATCAAGGCTGTCAGGGACTGTAC 5223 Query 52146 CCATGACAAAGCAGTTGAAGAGGGTGACATTTCGTCCAGTCCCGGCCCCGGCGGTGATCC 52205 |||| |||||||||||||| || || ||||||||| | ||||| || || | ||| | Sbjct 5224 CCATAACAAAGCAGTTGAACAGAGTCACATTTCGTTCGGTCCCAGCACCAGACTGGATAC 5283 Query 52206 GGCCAGCGGGCAG 52218 | ||||| || || Sbjct 5284 GACCAGCAGGTAG 5296 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 50791 GAAGTCCTCAAAGCTGATGTCTTC-GGGCAGGTTGATCGTCTTTGAGATCGAACTGTCAA 50849 |||||| |||||| ||||||||| |||||| || | ||||| |||||||| ||||| Sbjct 3872 GAAGTCATCAAAGGAGATGTCTTCAGGGCAG-TTCACAGTCTTGGAGATCGACGAGTCAA 3930 Query 50850 TCCACCGCTGGGCCGCAGCCTGCATGACAATGTG 50883 ||||| ||| || ||||||||||||||| |||| Sbjct 3931 TCCACTTCTGTGCAGCAGCCTGCATGACAGTGTG 3964 >seq287546 Length=513 Score = 145 bits (160), Expect = 3e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 44744 ATCGAATAGCGGGCTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGG 44803 || |||||||| || ||||| ||||| |||||||| || || || ||||||||||| || Sbjct 4 ATTGAATAGCGTGCAGAGTACTCATTAACGTTGGCTGTGCGATGGCGGATCCATTGACGA 63 Query 44804 GCCACAAACACGGGCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTG 44863 || ||||| ||||| ||||||| || | ||||| || || ||| || || ||| Sbjct 64 GCGACAAATACGGGGAGTTTGATGTGGAATTTGACTTCGCACATCTCGAAAGGTGTGGAA 123 Query 44864 TGCCAATGGCGCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCTTGGTGCCC 44923 ||||| || ||||| ||||| ||||||| | | ||| || | || | |||||||| Sbjct 124 TGCCAGTGACGCATTAGGTAACGGATTAAGCCCTCGTCATTTGTCACCGCTTTGGTGCCT 183 Query 44924 TGACCGTAGGATACGCGGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATT 44983 | ||||| || |||||||| ||| ||| |||| ||| |||||||| | || || Sbjct 184 TTGCCGTATGAAACGCGGGCAGCTTGGGTGATGGCGCTGTCGTTGCCCATGCAATCAATG 243 Query 44984 GGTCGGACAAAGCCATGATC 45003 |||| | |||||| || Sbjct 244 ACGCGGATCAGGCCATGGTC 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181519735136640