Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq83801 158 3e-34 seq273771 82.4 2e-11 >seq83801 Length=1216 Score = 158 bits (174), Expect = 3e-34 Identities = 337/491 (69%), Gaps = 12/491 (2%) Strand=Plus/Minus Query 8469 GTGCGCAAGATCTTCGGATTTGCGCTGGCGCTCAGTGACCAGGTCGCGCGGTTCAAGGGG 8528 |||||||| ||| |||| |||| || || || || ||| | || |||||||| | Sbjct 887 GTGCGCAACATCCTCGGCTTTGGCCTTGCCCTGTCAGATCAGATGGCCCGGTTCAAAGAA 828 Query 8529 CATACCTTCGACGATCTCGGAGATCTCGATGCGATGCTCGCCCAGGAATATGGTCTCAAG 8588 |||||||| ||||| | || | | || || || || | |||||||| ||| Sbjct 827 CATACCTTTGACGACATTGGGGGCCATGAGGCCATTCTTGAGCAGGAATACAACACCAAA 768 Query 8589 ATCGGCGGCGCGAAGGGCAACAAGAC-CTACTTGACCCATGACGGCCTCTTCAAGATCGA 8647 | ||||| || |||||||| || || || | ||| ||||| | |||||| | | Sbjct 767 CTGGGCGGTGCTAAGGGCAATAAAACGCTTCA-GACTGTCGACGGATTGTTCAAGGTTCA 709 Query 8648 GGTTCGCGTCTCCGATCTGC-TGACCTTCGGCCCCGAGCTGCAGGTTGCGAAGGGACTGA 8706 ||| | || || || || | | ||||||||||| ||||| ||| | || |||| || Sbjct 708 GGTGCAGGTTTCTGA-CTACATCACCTTCGGCCCAGAGCTTCAGATCGCCAAGGCGCTCT 650 Query 8707 TCGACGAGTGTCTGAACGAATGGGCGGCCGACAGCCGTCCCGAGATCCGTGCGATCGTCA 8766 | ||||| || |||| |||||||| || ||| || || ||| | || || | || | Sbjct 649 TTGACGAATGCCTGACTGAATGGGCTGCGGACGCGCGGCCAGAGCTGCGGGCCTTGGTGA 590 Query 8767 CGCGCGCCTTCAACACCGACAAGGAAGGCCAGATCAACCGCTC-CGAAGTCTTCATGCTG 8825 || || ||| | ||||||||| || | ||||||||||| || | |||| ||||| Sbjct 589 CGAATGCGTTCCAAACCGACAAGACGGGGAACATCAACCGCTCTCGCA-TCTTTATGCTT 531 Query 8826 CTGCGCCTCGAGATCGAGGACCCGCGCTGGCAGG-AGGCGATGCGCGCGATCCGCGATGC 8884 |||||| || | |||||| || |||||||||| |||| | || || || ||||| || Sbjct 530 TTGCGCCAAGACAGCGAGGATCCCCGCTGGCAGGAAGGCCA-ACGTGCCATTCGCGAGGC 472 Query 8885 GATCCGGGTGATCGGGTCGAAGACCTACATGCGC--TTCTCGAAGCGCAAGGCCTTCGAC 8942 || || || |||| || ||| || ||||| || ||| | || || | | ||| Sbjct 471 CATGCGCGTTGTCGGCTCCAAGCGGTATGTGCGCTGTTATCGGCGTGCCAGCCAT--GAC 414 Query 8943 GCGCCCTGGGA 8953 || | |||||| Sbjct 413 GCCCGCTGGGA 403 >seq273771 Length=2308 Score = 82.4 bits (90), Expect = 2e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 25598 GACCACGTCTTCATGAACAAGGAATTCCTCTATGGCACGGATGCCCGCGCCAATGTCGGC 25657 || |||||||||| ||| |||||||||||||| ||| |||| ||||| |||||| ||| Sbjct 1972 GATCACGTCTTCAAGAAAAAGGAATTCCTCTACGGCGCGGACGCCCGTTGCAATGTTGGC 1913 Query 25658 TTCGGGTTCTGGCAAATGGCCTA 25680 || || | ||||| |||||||| Sbjct 1912 TTTGGCCTGTGGCAGATGGCCTA 1890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128176786970256