Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_020868.1 Length=76718 Score E Sequences producing significant alignments: (Bits) Value seq121188 152 3e-32 seq76541 87.8 9e-13 >seq121188 Length=15723 Score = 152 bits (168), Expect = 3e-32 Identities = 410/611 (67%), Gaps = 16/611 (3%) Strand=Plus/Minus Query 24882 GGTGCAAAGACAGGTGTGCGTGGTGCGAAAGAGATGGGTAAACGTCCTCAGCTGGCGGTA 24941 ||||| ||| | ||| | |||||| |||| | |||||||| ||| ||| || || Sbjct 1247 GGTGCCAAGTCTGGTATCCGTGGTACGAAGATCTTTGGTAAACGACCTTCGCTTGCAGTT 1188 Query 24942 CTCGATGACTTGTTCTCTGATGAAGATGCTAAGTCTCCAACAGTTATTGAGAACGTAGAG 25001 |||||||||||| |||| ||||||||||| ||||||||||| | || | ||| | | Sbjct 1187 CTCGATGACTTGATCTCAGATGAAGATGCGAAGTCTCCAACTGCGATGGCGAAGATTAAC 1128 Query 25002 GCAACAATCTATAAGGCGGTGACA-TATGCACTTCATCCGAAAAACAATATTATCATTTG 25060 | || | || |||| | | ||| | || ||||| || |||| | | ||| Sbjct 1127 GATACTGTTTACAAGG-GTTTACACCACGCTCTTCACCCACAAAAGTCAAAGACTATTCT 1069 Query 25061 GTCTGGAACTCCCTTTAACGCGAAAGATCCTC-TTTATAAAGCAGTCGAAAGTGGTGCTT 25119 | ||| |||||||| || ||| || | || | ||| ||||| |||| |||||| | Sbjct 1068 GAATGGGACTCCCTTCGACAAGAACGA-CATCGTGTATCAAGCAATCGAGTCTGGTGCAT 1010 Query 25120 GGGCGGTTAACGTTTTCCCTGTATGTGAGCAGTTCCCCTGCGCCAGAGAA-GACTTTCGT 25178 ||| ||| ||||||| || || ||| || |||| |||| |||| || || | Sbjct 1009 GGGAGGTGAACGTTTGGCCAGTGTGTAAGGAGTT-TCCTGTTGATAAGAAGGATTTCCAA 951 Query 25179 GGGTCTTGGCCTGACCGTTTCACATACGACTATGTCAAAGAACAGTACGACAT-TGCGAT 25237 | ||||| || ||||| || |||||| | | ||||| | |||||| | | | | Sbjct 950 CCAGCATGGCCAGAACGTTTTACCTACGACCAGTTGAAAGAGGATTACGACTTCTTCAAG 891 Query 25238 CAAGACTGGTAAAGCGGACACTTTCAACCAAGAACTTATGCTTCGCATCATGTCAGATGA 25297 ||| | |||||| || | ||| || || ||||||||||| || | ||||| Sbjct 890 CAACA-AGGTAAACTTGAGTCGTTCCGTCAGGAGCTTATGCTTCGGATTCAGGATGATGA 832 Query 25298 GGATCGTCTCATACTCGACTGTGACATTAGTTGG-TACAAGAGAAACACACTCTTAGAGA 25356 | |||| | | | || ||||||| ||||| | ||| |||||||| || | | || Sbjct 831 GTCTCGTTTGGTTCAGGAAGGTGACATCGGTTGGTTCCAACGGAAACACA-TCCTTGCGA 773 Query 25357 AGAAGGACGACTACAACTTCTATATCACTACCGACTTTGCAACAGGTGCCGAGAAACACA 25416 | ||| | || || || ||||| ||||| || |||||||| || || | |||||| | Sbjct 772 ACAAGAAGGATTATAAGTTCTACATCACCACTGACTTTGC--CACGT-CGTCGAAACAAA 716 Query 25417 AT---GACTTCTCTGTTATTTCTGTTTGGGCATACGACTCACACGGTAACTGGTTCTGGG 25473 | || | || || || || ||||| || ||||| | || | ||| ||||| Sbjct 715 CTGCGGATTATTCCGTACAATCAGTATGGGCGTATGACTCGAATGGGGATTGGCACTGGG 656 Query 25474 TAGACGGTATT 25484 | |||||| || Sbjct 655 TTGACGGTGTT 645 >seq76541 Length=11138 Score = 87.8 bits (96), Expect = 9e-13 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 70658 TGCTTATTGTACACATACCAAGTACTTAAACAGTCCACTAAGTTATAGCGGAGAAGATCG 70717 || |||||||| |||||||||||| || | ||||| | ||| || | ||| | Sbjct 403 TGTTTATTGTAGACATACCAAGTAGATAGGCCATCCACGAGGTTGTATTCCA--AGAGCT 460 Query 70718 TTCTCTG--GTATCAGTTTAATATCATCGATATCATCCTGAGCGTAGTTGCCTGCGAACT 70775 || | | | ||| | | || |||| ||| || || ||| ||||| |||||||||| Sbjct 461 TTGGCAGAGGGATCTGCGTGATGTCATGGATGTCTTCAACAGCATAGTTTCCTGCGAACT 520 Query 70776 CATGAGCCTGATCTTTCAAGCTCAGCTTATTACCGGCACAAGAATTGGTGGCCA 70829 | ||||||||| | |||| | || || ||||| ||||| ||||||||||||| Sbjct 521 CCTGAGCCTGAACCTTCAGACCCAACTCGTTACCAGCACATGAATTGGTGGCCA 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244509699335704