Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq78081 118 2e-21 seq11950 114 2e-20 >seq78081 Length=4256 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||| || | |||| ||| || | || ||||||||||| || || | Sbjct 2982 AATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACG 3041 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| ||||| ||||| || |||||||| |||||||| || | |||| || || Sbjct 3042 CTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCGATGGT 3101 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | |||||| || || || || |||||||| || || || || || || || || Sbjct 3102 ATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAAATCTG 3161 Query 193358 CAT 193360 ||| Sbjct 3162 CAT 3164 >seq11950 Length=2906 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | | ||| || | ||| |||||||| || || || | | Sbjct 1298 ATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGC 1239 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || ||||||||||| || || || ||||| || | |||| |||||| Sbjct 1238 TGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTG 1179 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | |||||| || ||||| || ||||| || || || || || || || || ||| Sbjct 1178 TCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGC 1119 Query 193359 ATT 193361 ||| Sbjct 1118 ATT 1116 Score = 107 bits (118), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || | | ||||||||| || || ||||||||||| Sbjct 360 ATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTT 301 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| || | || ||| || || || | |||||| ||||| || || Sbjct 300 ATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGAT 241 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || ||||| || || || || ||||||||| Sbjct 240 TGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||||| || |||| || | |||| ||| || ||| ||||||||| Sbjct 890 ATTCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCG 831 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || |||| || || || || ||||| | | ||| ||||| || Sbjct 830 GACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGG 771 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || || | || | || ||| || || || | |||| Sbjct 770 GGAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCA 711 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || || || || || || || || ||||| ||||||||| Sbjct 710 ACTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896408716821120