Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq285389 113 7e-20 seq78081 87.8 3e-12 seq11950 86.0 9e-12 >seq285389 Length=790 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| ||||||| ||| | || || ||||||||||| || |||| | |||||| Sbjct 584 AGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGTGATAT 643 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | || |||||| ||||| |||||||| || | | |||||| | ||| || Sbjct 644 CATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAACTCAAC 703 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||| | |||||| | ||| || || | |||||||| ||||| ||| |||||||||| | Sbjct 704 TAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATACCAAT 763 Query 18040 TAGTCTGAAAGGTAGAG 18056 || || | ||||||| Sbjct 764 TAAACTTACCGGTAGAG 780 >seq78081 Length=4256 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | || || ||||| ||||| | || || || ||| Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || || | ||||| |||||||| || || || |||||||| ||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAA 3045 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | |||||| ||||||||||| ||| Sbjct 3044 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGAT 3009 >seq11950 Length=2906 Score = 86.0 bits (94), Expect = 9e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || | ||||| ||||| || ||| |||| || || | || Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || || || || ||||||||||| || || ||||| || Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | |||||| ||||| || |||||| | | ||| | || ||||| || Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 156002 TATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| || | || |||||| Sbjct 384 CAT-TCAAAAGGAATCCACCCTTCAT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729231625385600