Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq78081 104 5e-17 seq11950 89.7 1e-12 >seq78081 Length=4256 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || || || | |||||| |||| || | || || || |||||||| || | | Sbjct 2983 ATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGC 3042 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || ||||| || |||||||| ||||| | || ||||| || | | Sbjct 3043 TGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCGATGGTA 3102 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || || || || |||||||||||||| || | || |||| || |||||| Sbjct 3103 TCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAAATCTGC 3162 Query 192535 AT 192536 || Sbjct 3163 AT 3164 >seq11950 Length=2906 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || | || || |||| || | ||| || || || ||||| || | Sbjct 1299 GATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACG 1240 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || ||||||||||| || || || || | || ||||| |||| Sbjct 1239 CTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGT 1180 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | || || || |||||||||||||| ||||| | || || | || ||||| Sbjct 1179 GTCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTG 1120 Query 192534 CATT 192537 |||| Sbjct 1119 CATT 1116 Score = 84.2 bits (92), Expect = 4e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || ||||| || | || || |||| || | ||| || || ||||||| Sbjct 393 CTTTTGA-ATGTTGTAATCGGAGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGA 335 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | ||||||||| || || |||||||||||||| || || || || || || Sbjct 334 TGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCT 275 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | ||||| | || || ||||| || || ||||| ||||||| || || | | Sbjct 274 CAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGA 215 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 214 AGATTTGCATT 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980839498791600