Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq78081 96.9 6e-15 seq285389 91.5 3e-13 seq11950 84.2 4e-11 >seq78081 Length=4256 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || | | |||| | || || | || || || ||||| || || | Sbjct 2982 AATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACG 3041 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| || || || ||||| || |||||||| ||||| | || ||||| || || Sbjct 3042 CTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCGATGGT 3101 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || || || || |||||||||||||| || | || |||| ||| ||||| Sbjct 3102 ATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAAATCTG 3161 Query 172067 CAT 172069 ||| Sbjct 3162 CAT 3164 >seq285389 Length=790 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||||||||| || ||| | ||||| || || |||||||| |||| | |||||| | Sbjct 587 TTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGTGATATCAT 646 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA 38950 || |||||| ||||| ||||| | ||| | | |||||| | | || || ||| Sbjct 647 ATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAACTCAACTAA 706 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 | |||||| | || || || | ||||||| ||| | || |||||||||| | ||| Sbjct 707 GAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATACCAATTAA 766 >seq11950 Length=2906 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || || || || || || | ||| || || || || ||||||||||| Sbjct 1271 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTG 1212 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || | || ||||| ||||| || || | || || || ||||||||| Sbjct 1211 TCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATG 1152 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| | || || | ||| ||||||||| Sbjct 1151 GTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901870540852800