Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq31316 95.1 4e-14 seq109714 87.8 5e-12 >seq31316 Length=7037 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 60136 TAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCC 60195 |||||| || || || || | | ||| || ||||| || || ||||| || || Sbjct 3415 TAATTGGGTAAAGATGTAACGCGGGGAGGCATGATCCTTTCCGCCGGCCAGACGAGTCCC 3474 Query 60196 AAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAG 60255 || ||||| | ||||||| |||||||||||||| ||||| ||| | |||||||| || Sbjct 3475 GAACTGTCCAATGGGCTGGAGGAGATTAATGTTGTTGGAGCCCACGTAGTTTTGAGCTAG 3534 Query 60256 ACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAAC 60315 | || || | ||| | | ||| || ||||| ||||| |||| |||| ||| Sbjct 3535 ATTAATGATGGTACCCATGAGGGAGGCCTCGCCGTGGTGATAGGCAGACATTTCTCCAAC 3594 Query 60316 ATATCCACTGAATTGTGCGACTTTAATTTC 60345 | ||||| || |||||| ||||| | ||| Sbjct 3595 AGATCCAGCGAGTTGTGCAACTTTGACTTC 3624 >seq109714 Length=2064 Score = 87.8 bits (96), Expect = 5e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 406033 GAACTATGGAACTATACTGTTCATTTGTATAGTTATTAAGAGTAAAACACCACCTTTTAC 406092 |||||||||||||||| | | ||| || ||||||| ||||||||||||||||||| Sbjct 705 GAACTATGGAACTATAATCACTCTCTGTGTAATTATTAAAAGTAAAACACCACCTTTTAG 764 Query 406093 AAGGTGAAATTTG-TGTTTTATTGGAGAGAGAGGGAGTTATAGTATTACCTCCCTCTCCG 406151 ||||||||||| | | | | | | | ||| | | |||||||||| ||| | Sbjct 765 CTGGTGAAATTTGCTTTCGTTTCGTGGTTAATGGGGGGTCTAGTATTACC-CCCCCATTA 823 Query 406152 GAACTATTGGAACTATT 406168 ||||||||||||||||| Sbjct 824 GAACTATTGGAACTATT 840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466374976735592