Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq36375 80.6 6e-11 >seq36375 Length=4802 Score = 80.6 bits (88), Expect = 6e-11 Identities = 104/140 (74%), Gaps = 8/140 (6%) Strand=Plus/Minus Query 8545 CGTCGAAATCGATCCGGGCGAAATATCCTTTGTAAGACATGGCGTTGTTCATGGCTTGAT 8604 |||| | ||||| |||||| ||||||||||||| | ||||| ||| |||||| | | Sbjct 2530 CGTCATATTCGATGCGGGCGGAATATCCTTTGTAGGTCATGGTGTTTGTCATGGTGTCAC 2471 Query 8605 TCC---CATTTCGATAAA-CCAGTCGCGCAGATCCTCCACCTGATACCGCTTCGCCTCCT 8660 || | |||| | ||| || || |||| || ||| ||||||||||| || |||| Sbjct 2470 CCCGATCCTTTCCAAAAATGCA--CGGGCAGCTC--GCACTTGATACCGCTTGGCTTCCT 2415 Query 8661 TGCCCGGGTGCGGGCGGTGG 8680 || | |||||||| |||||| Sbjct 2414 TGGCTGGGTGCGGACGGTGG 2395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112866241496064