Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq121188 154 7e-33 seq76541 113 2e-20 >seq121188 Length=15723 Score = 154 bits (170), Expect = 7e-33 Identities = 492/748 (66%), Gaps = 20/748 (3%) Strand=Plus/Plus Query 64588 GGATGAATCCACCTTGTTGACCTGTAACTTCAATGCCTACAGATTGAGGTTGGTACTCTA 64647 |||| || ||||| || ||||| |||| |||| || || || || | |||||| Sbjct 533 GGATAAACCCACCCTGCTGACCAGTAATCTCAACACCGACGCTCTGTGGATTGTACTCCT 592 Query 64648 CAACCAATCTGAATAGGTCATCAAAGTTCTTATCCATAAGCTGGCGTCTACAAATACCAT 64707 ||||||| | || | || || | ||||||| ||| || ||||| ||| | Sbjct 593 CAACCAAACGAAACAAATCGTCGATTGAGGTATCCATTGTCTGTCGAGCACAAACACCGT 652 Query 64708 CAACCCAGAACCAATCTCCATTGGAGTTGATGGCCCATACAGAAATAACTGAATAGTCAG 64767 |||||||| |||||| ||||| |||| |||||||| || || ||||| || | Sbjct 653 CAACCCAGTGCCAATCCCCATTCGAGTCATACGCCCATACTGATTGTACGGAATAATCCG 712 Query 64768 CAGACTGTTTTTCAGAAGTAGCAAAGTCAGTAGTAATATAGAAATTAAAATGACCTCTAT 64827 ||| ||||| || || ||||||||||| || || ||||| ||| ||| | ||| Sbjct 713 CAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATC-CTTCTTG 771 Query 64828 TCAGCA--GAAGAGACTTACGTTTATACCATTGGATATCAGAATCCATGA--CAA--GTC 64881 | ||| || | | || |||| |||| ||| ||| ||| ||| ||| | Sbjct 772 TTCGCAAGGATGTGT-TTCCGTTGGAACCAACCGATGTCACCTTCC-TGAACCAAACGAG 829 Query 64882 TCTCTTCATCAGAGGTAATTCGTAGCATCAGTTCCTGATTGAATGCAGCAACCTGTCCA- 64940 ||| ||||| ||| || ||||| || |||||| ||| | ||| | || Sbjct 830 ACTCATCATCCTG---AATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTT 886 Query 64941 GTTGATACAGCAAGGTCATATTGCCCTTTAACAAAGTCATAGGAGAAGCGGTCTTCCCAA 65000 |||| | | ||| || || | | |||| | ||| |||| || || ||| ||| Sbjct 887 GTTGCTTGAAGAAG-TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCAT 945 Query 65001 GCTCCTAC-AAATTCTTCACGAGAACATGGGAATTTCTCACAAATAGGGAATACGTTTAC 65059 ||| | |||| |||| |||| || || | || ||| | || | ||||| || Sbjct 946 GCTGGTTGGAAATCCTTCTTATCAACA-GGAAACTCCTTACACACTGGCCAAACGTTCAC 1004 Query 65060 GTACCAACCACCTGATTCTACTGCTTCATAGAGAATATCGTTCTTATTGAAGGGTGTTCC 65119 | ||| |||| || || | ||||| ||| | || |||||||| | |||||| || || Sbjct 1005 CTCCCATGCACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGTCCC 1064 Query 65120 ACTGAAAACAATCTTTCTACGTACAGGGTCAAGTGCATAATCAACACCTTTGTACACAGT 65179 | | | || | ||||| | |||| ||| || | | | ||| ||||| ||||| Sbjct 1065 ATTCAGAATAGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGT 1124 Query 65180 ATCCTTGATTGCCTGCATAGTTGACTTGGAT--TTAGCATCATCATCACTAACCAAGTCA 65237 ||| || || | ||| | | ||||| || ||||| ||||| | ||||||| Sbjct 1125 ATCGTTAATCTTCGCCATCGCAG--TTGGAGACTTCGCATCTTCATCTGAGATCAAGTCA 1182 Query 65238 TCCAATACAGCTAAAACAGGACGTTTACCAAAGATTTTAGTACCACGAAGACCTGTCTTA 65297 || | || || | ||| |||||||||||||| || |||||||| | ||| | ||| Sbjct 1183 TCGAGAACTGCAAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTG 1242 Query 65298 GCACCAAACATACGTACACCTAGCTTAT 65325 ||||| |||||||| ||||| | ||||| Sbjct 1243 GCACCGAACATACGGACACCAAACTTAT 1270 >seq76541 Length=11138 Score = 113 bits (124), Expect = 2e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24606 ACTTATCTGGCTACAAACTCTTGTGCAGGTAATGAATTGGGACTGAAAGCTCAGGCTCAT 24665 || |||||||| || || || ||||| ||||| || ||||| ||||| | ||||||||| Sbjct 581 ACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAG 522 Query 24666 GAATTTGCTGGCAACTATGCACAAGAAGATATTAATGACATTACTAAGATTCCTCTTCCA 24725 || || || || |||||||| ||||| || ||||||| || |||| ||||| ||| Sbjct 521 GAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCAGATCCCTCTGCCA 462 Query 24726 GAGTTACTGGAATACAACTTAGTTGACTGTTTAAGCACTTGGTATGT 24772 || | ||||||||||| | || || | || ||||||||||| Sbjct 461 AAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATGT 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230721570383480