Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq121188 138 5e-28 seq76541 116 2e-21 >seq121188 Length=15723 Score = 138 bits (152), Expect = 5e-28 Identities = 490/749 (65%), Gaps = 20/749 (3%) Strand=Plus/Plus Query 59459 ATGAACCCACCTTGTTGACCTGTAACTTCAATGCCTACAGATTGAGGTTGGTACTCTACA 59518 || |||||||| || ||||| |||| |||| || || || || | |||||| || Sbjct 535 ATAAACCCACCCTGCTGACCAGTAATCTCAACACCGACGCTCTGTGGATTGTACTCCTCA 594 Query 59519 ACTAGTCTGAATAGGTCATCAAAGTTCTTATCCATTAACTGACGTCTACAAATACCATCA 59578 || | | || | || || | |||||||| ||| || ||||| ||| ||| Sbjct 595 ACCAAACGAAACAAATCGTCGATTGAGGTATCCATTGTCTGTCGAGCACAAACACCGTCA 654 Query 59579 ACCCAGAACCAATCTCCATTAGAGTTGATA-GCCCATACAGAGATAACTGAATAGTCAGC 59637 |||||| |||||| ||||| |||| ||| |||||||| || || ||||| || || Sbjct 655 ACCCAGTGCCAATCCCCATTCGAGTC-ATACGCCCATACTGATTGTACGGAATAATCCGC 713 Query 59638 AGACTGTTTTTCAGAAGTAGCAAAGTCAGTAGTGATATAGAAATTAAAATGAC-CTCGAT 59696 || ||||| || || ||||||||||| ||||| ||||| ||| ||| || | | Sbjct 714 AGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTT 773 Query 59697 TCAACAGAAGAGACTTACGCTTGTACCATTGGATATCAGAATCCATGA--CAA--GTCTC 59752 | || | | || || | | |||| ||| ||| ||| ||| ||| | | Sbjct 774 CGCAAGGATGTGT-TTCCGTTGGAACCAACCGATGTCACCTTCC-TGAACCAAACGAGAC 831 Query 59753 TCTTCATCGGAGGTAATTCGTAGCATCAATTCCTGATTGAAAGCAGCAACCTGTCCA-GT 59811 || ||||| ||| || ||||| | |||||| ||| | ||| | || || Sbjct 832 TCATCATCCTG---AATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGT 888 Query 59812 TGATACAGCAAGGTCGTATTGCCCTTTAACAAAGTCATAGGAGAAGCGGTCTTCCCAAGC 59871 || | | ||| ||||| | | |||| | ||| |||| || || ||| ||| || Sbjct 889 TGCTTGAAGAAG-TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGC 947 Query 59872 TCCTAC-AAATTCTTCACGAGAACATGGGAATTTCTCACAAATAGGGAATACGTTTACGT 59930 | | |||| |||| |||| || || | || ||| | || | ||||| || | Sbjct 948 TGGTTGGAAATCCTTCTTATCAACA-GGAAACTCCTTACACACTGGCCAAACGTTCACCT 1006 Query 59931 ACCAACCCCCTGATTCTACTGCTTCATAGAGAATATCGTTTTTATTAAAGGGTGTTCCAC 59990 ||| | || || || | ||||| ||| | || ||||| || | ||||| || ||| Sbjct 1007 CCCATGCACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGTCCCAT 1066 Query 59991 TGAAAACAATCTTTCTACGTACAGGGTCGAGAGCATAATCAACACCTTTGTACACAGTAT 60050 | | || | ||||| | |||| ||||| | | | ||| ||||| ||||||| Sbjct 1067 TCAGAATAGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTAT 1126 Query 60051 CTTTGATTGCCTGCATAGTTGACTTGGAT--TTAGCATCATCATCACTAACCAAGTCATC 60108 | || || | ||| | | ||||| || ||||| ||||| | ||||||||| Sbjct 1127 CGTTAATCTTCGCCATCGCAG--TTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATC 1184 Query 60109 CAATACAGCTAAAACAGGACGTTTACCAAAGATTTTAGTACCACGAAGACCTGTCTTAGC 60168 | || || | ||| |||||||||||||| || |||||||| | ||| | ||| || Sbjct 1185 GAGAACTGCAAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGC 1244 Query 60169 ACCAAACATACGTACACCTAGCTTATGCC 60197 ||| |||||||| ||||| | ||||| || Sbjct 1245 ACCGAACATACGGACACCAAACTTATTCC 1273 >seq76541 Length=11138 Score = 116 bits (128), Expect = 2e-21 Identities = 136/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 19085 ACTTATCTGGCTACAAACTCTTGTGCAGGTAATGAATTGGGACTAAAAGCTCAGGCTCAT 19144 || |||||||| || || || ||||| ||||| || ||||| || || | ||||||||| Sbjct 581 ACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAG 522 Query 19145 GAATTTGCTGGCAACTATGCACAAGAAGATATCAATGACATTACTAAGATTCCTCTTCCA 19204 || || || || |||||||| ||||| ||| ||||||| || |||| ||||| ||| Sbjct 521 GAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCAGATCCCTCTGCCA 462 Query 19205 GAGTTACTGGAATACAACTTGGTTGACTGTTTAAGCACTTGGTATGT-TGCAGATAAACA 19263 || | ||||||||||| | || || | || ||||||||||| | || ||||||| Sbjct 461 AAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATGTCTACA-ATAAACA 403 Query 19264 T 19264 | Sbjct 402 T 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229777702166584