Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021789.1 Length=75994 Score E Sequences producing significant alignments: (Bits) Value seq287868 241 6e-59 >seq287868 Length=1240 Score = 241 bits (266), Expect = 6e-59 Identities = 384/547 (70%), Gaps = 16/547 (3%) Strand=Plus/Plus Query 43815 ATGAACTTAGATTATTACAAAAATATAG-TGAGAAATCACCCAGAGGAATTTGAGCTATT 43873 ||||| ||||| || ||||||| |||| ||| || || | | |||||||| | || Sbjct 132 ATGAATTTAGAATACTACAAAAGAATAGCTGAACGAT-ACGGAAACGAATTTGATTTGTT 190 Query 43874 TAAGAATAAGTTCTTTCCTATTGTGATGAAGTGGGAAGGTGGAGGCGAACTACACAACGT 43933 | ||| |||||||| ||||| ||||| |||||||| || || | ||||||| || Sbjct 191 TGTTAATTCATTCTTTCCGATTGTTATGAAATGGGAAGGCGGCGGAAAGTTACACAAAGT 250 Query 43934 TAAAGGTGATTCAGGCGGTTGGACTATTTGGGGAATAGCATACAACTACAACAAA-GCTC 43992 ||||| |||| ||||| ||||||||||||||||| || | || || ||||| | | Sbjct 251 AAAAGGCAATTCTGGCGGCTGGACTATTTGGGGAATTGCTTTTAATTATAACAAGCGATT 310 Query 43993 TATTCGATGATTTTAATGACTTTAAAGACACAACAAGAGAAGAAGCATCTTATATTGCAT 44052 || || |||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 311 GTTTAGA-GATTTTAACGACTTTAAAGACACAACAAGAGAAGAAGCGGCGTATATTGCAT 369 Query 44053 TTGTAAAGTATTACTTGGCGGCCAACGCAGAATTGGTACCAATGGATGCGAAGCTATACT 44112 | || || |||||| | || | || || | || | ||||| ||||| ||||| || | Sbjct 370 TCGTGAAATATTACGTTGCTTCTAAGGCTTATTTAATGCCAATAGATGCAAAGCTTTATT 429 Query 44113 ATTTTGATATGTGCTATAACATGGGCGTATCAAGAGGTATTAAGATACTTCAAAAATGCA 44172 |||| || ||| ||||||||||| || | | |||||||||| | ||||||||| Sbjct 430 ATTTCGACATGGCTTATAACATGGGAATAAACCGTGCTATTAAGATAATGCAAAAATGCG 489 Query 44173 TAGGTGTTAATGCCGATGGTAGAATTGGAAATATTACTAAGTCAAAAATACACAATGTAA 44232 || || || || || || | || || ||| || || ||||| | | || Sbjct 490 CTGGCGTGAAGGCTGACGGAATTATCGGTGCTATAACAAAAAGCAAAATGAAAGACGTTT 549 Query 44233 CAGAGTGCTGTTTGATGATTGAAAGAAATAAGTTCTATAATAGGCTAGTTGAAAACAACT 44292 | || ||||||| || ||||| ||| || ||| | || || | |||| || | Sbjct 550 CGGAAGTTTGTTTGAAGAACGAAAGGAATCGTTTTTATTACAGACTTGCGGAAAGAAAGT 609 Query 44293 ATAAAATGGGGAAATTCATTAAAGGTTGGTTAAATAGAAGTAAGGGAATATTTGATTTTA 44352 || ||||||| || || | || |||||||| |||||||| ||||||| Sbjct 610 AT---------AAATTCAGAAA---NNGGCTGAACAGAAGTAAAGGAATATTCGATTTTA 657 Query 44353 AATACTA 44359 ||| || Sbjct 658 GATATTA 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242201048697080