Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021791.1 Length=39148 Score E Sequences producing significant alignments: (Bits) Value seq286089 187 6e-43 seq286088 96.9 9e-16 seq251574 91.5 4e-14 >seq286089 Length=886 Score = 187 bits (206), Expect = 6e-43 Identities = 207/276 (75%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 13082 AAATAAGCAAAGCAAAAATATACAGGGTGTTGATTTTATTCATACTAGGTACCAAGATCT 13141 |||||| ||||| || || ||||| ||||| | ||||||||| ||| || | || | Sbjct 2 AAATAAACAAAGTAATAACATACAAGGTGTAAAGTTTATTCATTGTAGTTATAATGAAAT 61 Query 13142 GGAAATACCTAAAAATAGTTTAATTTATTGTGATCCGCCATATG------AGGGGACTA- 13194 || ||||||||||||||| | |||||||||||||| || || | | | || | Sbjct 62 AGATATACCTAAAAATAGTATTATTTATTGTGATCCACCTTACGATACAAAAGCAACAAA 121 Query 13195 --CAAAATACAAAGATGATTTTAATCACTCTGAGTTTTGGGAATGGTGCAGAGTTAAAAC 13252 ||||||||||||||||||||| ||| |||| |||||||| ||||||||| ||| Sbjct 122 GGGAAAATACAAAGATGATTTTAACCACACTGAATTTTGGGAGTGGTGCAGAAACAAAGT 181 Query 13253 TAAAGAGGGTCACAAGGTTTTTATAAGTGAGTACAATGCGCCTGATGATTTTAAATGTAT 13312 ||||| || || || || ||| | ||| |||||||| |||||||| ||||||||||| Sbjct 182 AAAAGAAGGACATAAAGTCTTTGTTTCTGAATACAATGCTCCTGATGACTTTAAATGTAT 241 Query 13313 ATGGCAAAATGAAATTACAAACAGCATAAATAATAA 13348 ||| |||| ||||| || | || || ||||| || Sbjct 242 TTGGGAAAAAGAAATACCACAAAGAATGAATAACAA 277 >seq286088 Length=830 Score = 96.9 bits (106), Expect = 9e-16 Identities = 166/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 12780 ACTTGGGTTGAGCCAATGGTTGGAGGTGCAAATATGATCGATAAGGTTGATGGAGAAAGG 12839 |||||||| || || | ||||| ||||| |||||||| ||||| ||| | || | || Sbjct 583 ACTTGGGTGGAACCTTTTGTTGGTGGTGCTAATATGATTGATAAAGTTAAAGGTAATAGA 642 Query 12840 ATTGGGGCTGATAGTAATAAATACTTAATATCCTTACTTAATGAAATGACTAAACCGGGC 12899 ||||| | ||| ||| |||| || | || | | |||||||||||||| | Sbjct 643 ATTGGTTCAGATTTAAATGAATATGTAGTTTCACTGTTAGATGAAATGACTAAAAATGAT 702 Query 12900 TTTAAATCTCCAGAAATTAATGaaaaaaaaTACAAAGACANNNNNNNNNNNNNNNNNNNN 12959 ||||| ||||| ||||| | |||| ||||||| || || | Sbjct 703 TTTAAGTCTCCTGAAATAAGTGAAGAAAAATATAATGATATTAAAAACAATCAAAAAAAT 762 Query 12960 TACCCTTTGTGGGTTGTGGGTTATGCAGGGTTTCAATTAAGCTTTGGCGGGAAGTGGTTT 13019 || || ||| |||| ||||||||||| ||||||||| ||||| | | |||||| Sbjct 763 TATCCAAAATGGATTGTAGGTTATGCAGGAACTCAATTAAGTTTTGGTGCAACTTGGTTT 822 Query 13020 GGAGGTTA 13027 ||| |||| Sbjct 823 GGAAGTTA 830 >seq251574 Length=1356 Score = 91.5 bits (100), Expect = 4e-14 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 13143 GAAATACCTAAAAATAGTTTAATTTATTGTGATCCGCCATATGAGGGGACTACAAAATAC 13202 |||||||||||||||||| ||||||| |||||||| || || | || || || Sbjct 553 GAAATACCTAAAAATAGTATAATTTACTGTGATCCTCCTTACAAAAACACAACTGGGTAT 494 Query 13203 AAAGATGATTTTAATCACTCTGAGTTTTGGGAATGGTGCAGAGTTAAAACTAAA---GAG 13259 || ||| | ||||||||| || |||| | ||||| ||| |||| ||| | Sbjct 493 AAGGATAAATTTAATCACGAAGATTTTTATAACTGGTGTAGA---AAAATGAAAAATCAA 437 Query 13260 GGTCACAAGGTTTTTATAAGTGAGTACAATGCGCCTGATGATTTTAAATGTATATGGCAA 13319 || || | |||||| | || ||||| ||| |||||||||||||| |||| | ||| || Sbjct 436 GGACATATAGTTTTTGTTAGCGAGTATAATATGCCTGATGATTTTATATGTGTCTGGGAA 377 Query 13320 AATGA 13324 || || Sbjct 376 AAAGA 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124723064673120