Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021794.1 Length=71443 Score E Sequences producing significant alignments: (Bits) Value seq287868 215 2e-51 >seq287868 Length=1240 Score = 215 bits (238), Expect = 2e-51 Identities = 380/550 (69%), Gaps = 16/550 (3%) Strand=Plus/Plus Query 40186 ATTATGAACTTAGATTATTATAAAAATATAG-TAAGAAATCACCCAGAGGAATTTGAGCT 40244 || ||||| ||||| || || |||| |||| | | || || | | |||||||| | Sbjct 129 ATCATGAATTTAGAATACTACAAAAGAATAGCTGAACGAT-ACGGAAACGAATTTGATTT 187 Query 40245 ATTCAAGAATAAGTTCTTTCCTATTGTGATGAAGTGGGAAGGTGGGGGCGAACTTCACAA 40304 || ||| |||||||| ||||| ||||| |||||||| || || | | ||||| Sbjct 188 GTTTGTTAATTCATTCTTTCCGATTGTTATGAAATGGGAAGGCGGCGGAAAGTTACACAA 247 Query 40305 CGTTAAAGGTGATTCTGGAGGATGGACTGTTTGGGGAATAGCATACAACTATAACAAA-G 40363 || ||||| ||||||| || |||||| |||||||||| || | || |||||||| | Sbjct 248 AGTAAAAGGCAATTCTGGCGGCTGGACTATTTGGGGAATTGCTTTTAATTATAACAAGCG 307 Query 40364 CTCTATTCGATGATTTTAATGACTTTAAAGACACAACATTAGAAGAAGCTGCGTATATTG 40423 | || || |||||||| |||||||||||||||||| ||||||||| |||||||||| Sbjct 308 ATTGTTTAGA-GATTTTAACGACTTTAAAGACACAACAAGAGAAGAAGCGGCGTATATTG 366 Query 40424 CATTTGTAAAGTATTACTTGGCGGCCAACGCAGAATTGGTACCAATGGATTCGAAGCTAT 40483 |||| || || |||||| | || | || || | || | ||||| ||| | ||||| | Sbjct 367 CATTCGTGAAATATTACGTTGCTTCTAAGGCTTATTTAATGCCAATAGATGCAAAGCTTT 426 Query 40484 ACTATTTTGATATGTGCTATAACATGGGCGTATCAAGAGGTATTAAGATACTTCAAAAAT 40543 | ||||| || ||| ||||||||||| || | | |||||||||| | ||||||| Sbjct 427 ATTATTTCGACATGGCTTATAACATGGGAATAAACCGTGCTATTAAGATAATGCAAAAAT 486 Query 40544 GTATAGGTGTTAATGCCGATGGTAGAATTGGAAACATTACCAAGTCAAAAATACACAATG 40603 | || || || || || || | || || || || || ||||| | | | Sbjct 487 GCGCTGGCGTGAAGGCTGACGGAATTATCGGTGCTATAACAAAAAGCAAAATGAAAGACG 546 Query 40604 TAACAGAGTGCTGTTTGATGATCGAAAGAAATAAGTTCTATAATAGGCTAGTTGAAAACA 40663 | | || ||||||| || |||||| ||| || ||| | || || | |||| | Sbjct 547 TTTCGGAAGTTTGTTTGAAGAACGAAAGGAATCGTTTTTATTACAGACTTGCGGAAAGAA 606 Query 40664 ACTATAAAATGGGGAAATTCATTAAAGGTTGGTTAAATAGAAGTAAGGGAATATTTGATT 40723 | ||| ||||||| || || | || |||||||| |||||||| |||| Sbjct 607 AGTAT---------AAATTCAGAAA---NNGGCTGAACAGAAGTAAAGGAATATTCGATT 654 Query 40724 TTAAATACTA 40733 ||| ||| || Sbjct 655 TTAGATATTA 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227689074862304