Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021799.1 Length=57447 Score E Sequences producing significant alignments: (Bits) Value seq286089 102 3e-17 seq251574 82.4 3e-11 >seq286089 Length=886 Score = 102 bits (112), Expect = 3e-17 Identities = 147/202 (73%), Gaps = 9/202 (4%) Strand=Plus/Plus Query 14506 AAGGTGTTAAATTTTTTAATAAAAATTACTATGATTTAGAAATACCTGAAAATAGTATTA 14565 ||||||| || ||| || || | ||| |||| |||| |||||| |||||||||||| Sbjct 25 AAGGTGTAAAGTTTATTCATTGTAGTTATAATGAAATAGATATACCTAAAAATAGTATTA 84 Query 14566 TTTATTGCGACCCACCTT---ATAAAAACACAACTAAGTATGTAGATAGAA--CAGACTT 14620 ||||||| || ||||||| ||| ||| |||| ||| | | ||| || || || Sbjct 85 TTTATTGTGATCCACCTTACGATACAAAAGCAACAAAG--GGAAAATACAAAGATGATTT 142 Query 14621 TAATCATATTTTGTTTTGGGATTGGGTGCGAACAAAAAGT-AAACAAGGACATAAAGTGT 14679 ||| || | | |||||||| | ||||| | | ||||| ||| ||||||||||||| | Sbjct 143 TAACCACACTGAATTTTGGGAGT-GGTGCAGAAACAAAGTAAAAGAAGGACATAAAGTCT 201 Query 14680 ACGTAAGTGAATACAATGCGCC 14701 || |||||||||||| || Sbjct 202 TTGTTTCTGAATACAATGCTCC 223 >seq251574 Length=1356 Score = 82.4 bits (90), Expect = 3e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 14082 ATTATGAAGTACATGGGTAGTAAAAATAGGTTTGCAAAAGAATTGTTGCCAATTATATTA 14141 |||||||| |||||||| ||||||||||| | || || | || || || || |||||| Sbjct 1009 ATTATGAAATACATGGGAAGTAAAAATAGAATAGCGAAGTACTTATTACCTATCATATTA 950 Query 14142 AAAGACAGAACTAAAGGACAGTACTATGTCGAGCCATTTGCTGGTGGTATGAACTTAATT 14201 || |||||| |||| || | ||| | || || |||| |||||| || | ||| Sbjct 949 AAGAACAGAAAAGAAGGTCAATGGTATATTGAACCTTTTGTTGGTGGCTGTAATTCTATT 890 Query 14202 GATAAAGTAGAAGGAAACCGAATAG 14226 ||||||||| || || |||||| Sbjct 889 TCTAAAGTAGATGGTAATAGAATAG 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183079172074128