Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021802.1 Length=53664 Score E Sequences producing significant alignments: (Bits) Value seq287868 237 5e-58 >seq287868 Length=1240 Score = 237 bits (262), Expect = 5e-58 Identities = 397/571 (70%), Gaps = 18/571 (3%) Strand=Plus/Plus Query 51379 AAACATATAAAAT---GAATTTAGATTATTATAAAAACATAGTTAGTAAACATCAAGAGG 51435 ||| ||| ||||| ||||||||| || || |||| |||| | | | | | | Sbjct 118 AAATATAAAAAATCATGAATTTAGAATACTACAAAAGAATAGCTGAACGATACGGAAACG 177 Query 51436 AATTTGAACTATTTAAAGATAAGTTCTTTCCTATTGTGATGAAGTGGGAAGGTGGAGGCG 51495 ||||||| | ||| || |||||||| ||||| ||||| |||||||| || || Sbjct 178 AATTTGATTTGTTTGTTAATTCATTCTTTCCGATTGTTATGAAATGGGAAGGCGGCGGAA 237 Query 51496 AACTACACAACGTTAAAGGTGATTCAGGCGGTTGGACTATTTGGGGAATAGCATACAACT 51555 | ||||||| || ||||| |||| ||||| ||||||||||||||||| || | || | Sbjct 238 AGTTACACAAAGTAAAAGGCAATTCTGGCGGCTGGACTATTTGGGGAATTGCTTTTAATT 297 Query 51556 ACAATAAA-GCTTTATTCGATGATTTTAATGATTTCTTAGACACAACAAGAGAAGAGGCT 51614 | || || | || || || |||||||| || || |||||||||||||||||| || Sbjct 298 ATAACAAGCGATTGTTTAGA-GATTTTAACGACTTTAAAGACACAACAAGAGAAGAAGCG 356 Query 51615 GCGTACATTGCATTTGTAAAGTATTACTTATCCGCTAACGCAGAATTAGTTCCAATGGAA 51674 ||||| |||||||| || || |||||| | | |||| || | ||| | ||||| || Sbjct 357 GCGTATATTGCATTCGTGAAATATTACGTTGCTTCTAAGGCTTATTTAATGCCAATAGAT 416 Query 51675 GCAAAGCTATATTATTTTGATATGTGTTATAATATGGGTGTATCAAGAGGTATTAAGATA 51734 |||||||| |||||||| || ||| |||||| ||||| || | | |||||||||| Sbjct 417 GCAAAGCTTTATTATTTCGACATGGCTTATAACATGGGAATAAACCGTGCTATTAAGATA 476 Query 51735 CTTCAAAAGTGCATAGGTGTTAATGCTGATGGTAAAATCGGAAACATTACTAAGTCAAAA 51794 | ||||| ||| || || || ||||| || | ||||| || || || ||| Sbjct 477 ATGCAAAAATGCGCTGGCGTGAAGGCTGACGGAATTATCGGTGCTATAACAAAAAGCAAA 536 Query 51795 ATACACAACGTAACAGAGTGTTGTTTAATGATTGAAAGAAATAAGTTCTATAATAGACTG 51854 || | |||| | || |||||| | || ||||| ||| || ||| | ||||| Sbjct 537 ATGAAAGACGTTTCGGAAGTTTGTTTGAAGAACGAAAGGAATCGTTTTTATTACAGACTT 596 Query 51855 GTAGAAAACAACTATAAAATGGGTAAATTCATTAAGGGTTGGTTAAATAGAAGTAAAGGT 51914 | |||| || |||||| |||| || | | | || ||||||||||| Sbjct 597 GCGGAAAGAAAGTATAAA---------TTCAGAAANNG---GCTGAACAGAAGTAAAGGA 644 Query 51915 ATATTTGATTTTAAATATTA-AAATTATGAC 51944 ||||| ||||||| |||||| ||| ||||| Sbjct 645 ATATTCGATTTTAGATATTAGAAAAAATGAC 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171015061778592