Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021803.1 Length=72369 Score E Sequences producing significant alignments: (Bits) Value seq287868 237 7e-58 >seq287868 Length=1240 Score = 237 bits (262), Expect = 7e-58 Identities = 383/547 (70%), Gaps = 16/547 (3%) Strand=Plus/Plus Query 39439 ATGAACTTAGATTATTACAAAAATATAG-TGAGAAATCACCCAGAGGAATTTGAGCTATT 39497 ||||| ||||| || ||||||| |||| ||| || || | | |||||||| | || Sbjct 132 ATGAATTTAGAATACTACAAAAGAATAGCTGAACGAT-ACGGAAACGAATTTGATTTGTT 190 Query 39498 CAAGAATAAGTTCTTTCCTATTGTGATGAAGTGGGAAGGTGGAGGTAAACTACACAACGT 39557 ||| |||||||| ||||| ||||| |||||||| || || || ||||||| || Sbjct 191 TGTTAATTCATTCTTTCCGATTGTTATGAAATGGGAAGGCGGCGGAAAGTTACACAAAGT 250 Query 39558 TAAAGGTGATTCTGGAGGATGGACTGTTTGGGGAATAGCATACAACTATAACAAA-GCTC 39616 ||||| ||||||| || |||||| |||||||||| || | || |||||||| | | Sbjct 251 AAAAGGCAATTCTGGCGGCTGGACTATTTGGGGAATTGCTTTTAATTATAACAAGCGATT 310 Query 39617 TATTCGATGATTTTAATGACTTTAAAGACACAACATTAGAAGAAGCTGCGTATATTGCAT 39676 || || |||||||| |||||||||||||||||| ||||||||| ||||||||||||| Sbjct 311 GTTTAGA-GATTTTAACGACTTTAAAGACACAACAAGAGAAGAAGCGGCGTATATTGCAT 369 Query 39677 TTGTAAAGTATTACTTGGCGGCCAACGCAGAATTGGTACCAATGGATGCGAAGCTATACT 39736 | || || |||||| | || | || || | || | ||||| ||||| ||||| || | Sbjct 370 TCGTGAAATATTACGTTGCTTCTAAGGCTTATTTAATGCCAATAGATGCAAAGCTTTATT 429 Query 39737 ATTTTGATATGTGCTATAACATGGGCGTATCAAGAGGTATTAAGATACTTCAAAAATGTA 39796 |||| || ||| ||||||||||| || | | |||||||||| | |||||||| Sbjct 430 ATTTCGACATGGCTTATAACATGGGAATAAACCGTGCTATTAAGATAATGCAAAAATGCG 489 Query 39797 TAGGTGTTAATGCCGATGGTAGAATTGGAAACATTACCAAGTCAAAAATACACAATGTAA 39856 || || || || || || | || || || || || ||||| | | || Sbjct 490 CTGGCGTGAAGGCTGACGGAATTATCGGTGCTATAACAAAAAGCAAAATGAAAGACGTTT 549 Query 39857 CAGAGTGCTGTTTGATGATCGAAAGAAATAAGTTCTATAATAGGCTAGTTGAAAACAACT 39916 | || ||||||| || |||||| ||| || ||| | || || | |||| || | Sbjct 550 CGGAAGTTTGTTTGAAGAACGAAAGGAATCGTTTTTATTACAGACTTGCGGAAAGAAAGT 609 Query 39917 ATAAAATGGGGAAATTCATTAAAGGTTGGTTAAATAGAAGTAAGGGAATATTTGATTTTA 39976 || ||||||| || || | || |||||||| |||||||| ||||||| Sbjct 610 AT---------AAATTCAGAAA---NNGGCTGAACAGAAGTAAAGGAATATTCGATTTTA 657 Query 39977 AATACTA 39983 ||| || Sbjct 658 GATATTA 664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230641851784080