Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq55516 188 5e-43 >seq55516 Length=756 Score = 188 bits (208), Expect = 5e-43 Identities = 155/189 (82%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18635 TATACCTAAATACCAATTCACTTTAAAATGGCATCAACATAGTGTAGATACATTCCTTGG 18694 |||| ||||| | ||||| |||||||||||||||||| |||||||| ||||| | || Sbjct 258 TATAGCTAAACATCAATTTACTTTAAAATGGCATCAAAGAAGTGTAGACACATTTTTAGG 199 Query 18695 ATTACCCTTTAATATCGCTTCTTATGCACTTTTAGCACAAATCATAGGTAAGATGACCAA 18754 ||||| |||||||| || || ||||| |||||||||||||| |||||||| ||||| || Sbjct 198 TTTACCTTTTAATATTGCATCATATGCTCTTTTAGCACAAATAATAGGTAAAATGACTAA 139 Query 18755 TATGGTACCAAAAGGTATTATAGGTGACTTAAGTAATGTACATATTTATGAACCTCATTT 18814 |||||| |||||||| ||| ||| |||||| |||||| ||| | |||||| ||||| Sbjct 138 TATGGTTCCAAAAGGAATTGAAGGAGACTTATCTAATGTTCATTTGTATGAATTACATTT 79 Query 18815 AGATGCTGT 18823 | ||||||| Sbjct 78 AAATGCTGT 70 Score = 98.7 bits (108), Expect = 6e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 18137 ATGGATTTTAAGAGGTGATACTAATATTAAATATCTTGTAGATAATAATATTAATATTTG 18196 |||| |||||| ||| |||||||| |||||||||||| |||| || ||||| ||||| Sbjct 756 ATGGTTTTTAAAAGGAGATACTAACATTAAATATCTTTTAGAAAACAATATATCAATTTG 697 Query 18197 GAATAAAGATGCTTATAATTATTATTTAAAAG 18228 ||||||||||||||||||| | | ||||||| Sbjct 696 GAATAAAGATGCTTATAATCACTTCTTAAAAG 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320082931566904