Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq157813 109 1e-19 seq262960 105 2e-18 >seq157813 Length=1168 Score = 109 bits (120), Expect = 1e-19 Identities = 243/361 (67%), Gaps = 3/361 (1%) Strand=Plus/Minus Query 39280 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 39339 ||||||| | |||| ||| ||||| | | ||||||| | ||||||||||| || || Sbjct 564 CCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTAGTGCATTATCCCAGCAATTACC 505 Query 39340 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGC 39399 |||| |||||| |||||| | || |||| ||||| | || || || || | | || Sbjct 504 ACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAGCAATTG-CCTAAATTTCAAGC 446 Query 39400 TCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACGGGTTT 39459 ||||||| |||||||| || || || ||||| ||||| | ||| || || | || Sbjct 445 TCGTATATTGACTGCCTTGGTCTGAATGAAACATTACCCCTCTGGGTTTTCCCCTATGTT 386 Query 39460 CCCATGCCATTTCCAGCGCTTTCATGGTGAGC-CTGCTGTCCGGCGAGAACGACATGGCC 39518 | ||| |||| || || || || ||| ||| ||| || | || || | Sbjct 385 GATAAGCCTTTTCAAGGGCGTTGATTACCAGCGATGC-GTCTGGGTGCATTGATATCGAT 327 Query 39519 CAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTA 39578 || || | | | |||| | | ||| | || |||||| | ||| |||||| || Sbjct 326 CAACCGATAACTCGCCGTGCGTATAAGTCAATAATAACGGCTAAGTAGATCCAGCGACTA 267 Query 39579 CCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAAC 39638 |||| |||||||||||| | ||| || ||||| || || || ||||| || | ||| Sbjct 266 CCCGCCCAGATATAGGTTATATCGCCACACCAAACGGAGTTAGGGTCGGTGACAGTAAAC 207 Query 39639 T 39639 | Sbjct 206 T 206 >seq262960 Length=559 Score = 105 bits (116), Expect = 2e-18 Identities = 120/160 (75%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 39280 CCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCC 39339 ||||||| | |||| ||| ||||| | | ||||||||| ||||||||||| || || Sbjct 397 CCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTGGTGCATTATCCCAGCAATTACC 456 Query 39340 GCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTGCCTGC 39399 |||| |||||| |||||| | || |||| ||||| || || |||| | || | || Sbjct 457 ACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAACAATTGCCTAAATCT-CAAGC 515 Query 39400 TCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCC 39439 ||||||| |||||||| ||||| || ||||| ||||| Sbjct 516 TCGTATATTGACTGCCTTGATCTGAATGAAACATTACCCC 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132143943514704