Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28030 111 2e-18 seq182767 100 3e-15 >seq28030 Length=5412 Score = 111 bits (122), Expect = 2e-18 Identities = 214/315 (68%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| |||||||||| ||| ||||| || ||| | | | || | |||||| Sbjct 1844 GAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTGG 1903 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | | |||||| ||||| ||||| || |||||| Sbjct 1904 ACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAAA 1963 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || ||||| || || || | ||||| ||||| | | || |||| | Sbjct 1964 AAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATCT 2023 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||| || |||||| |||||||| ||| | ||||||| ||| |||| |||||| Sbjct 2024 AGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTTTG 2083 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929 ||||| | ||| | | |||| |||| || | || ||||||||| | ||||| || Sbjct 2084 TACATGTTCCAGATGTCTGGGTATTGGATGGGAAGGACGACAAAGCGTTGTGGGTTCTCC 2143 Query 869930 CGCAACAGGGGTTCG 869944 | | || |||||| Sbjct 2144 TGTAGGAGAGGTTCG 2158 >seq182767 Length=2084 Score = 100 bits (110), Expect = 3e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || || ||||| || || || | |||||||||| |||| | ||||| ||||| Sbjct 1679 AACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGATGCCCTCG 1620 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTG 1627467 |||| |||||||| || | ||| | ||||||||||||| |||||| ||| || |||||| Sbjct 1619 TTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCAAGAGAAGGGAGTTG 1560 Query 1627468 CGCAGGCC 1627475 || ||||| Sbjct 1559 CGGAGGCC 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6083454019451272