Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq78081 136 4e-27 seq11950 131 2e-25 seq271769 91.5 1e-13 >seq78081 Length=4256 Score = 136 bits (150), Expect = 4e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || || || |||||||| ||||| ||||| || || || | Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || || || ||| |||||||| || || ||||| ||||| ||||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAA-ATCCAAGATAAGGAGGGAATCCCTCCAGATCA 3046 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||||||||||||||||| || ||||| |||||| ||| | | || || || || Sbjct 3045 ACAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGACTACAA 2986 Query 24883 CATTCAAAA 24891 ||||||||| Sbjct 2985 CATTCAAAA 2977 >seq11950 Length=2906 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || ||||| ||||| || || || || |||| | Sbjct 1117 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGA-GCCATC 1175 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||| |||||||||||||| || || ||||| Sbjct 1176 TGACACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 1235 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| ||||| || || || |||||| | | | | || || || || Sbjct 1236 GCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACAA 1295 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || |||||||| |||| Sbjct 1296 CATCCAGAAGGAATCCACCCTTCACTTGGTCCTGCG 1331 Score = 129 bits (142), Expect = 5e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| ||||||| || ||||| || || || || || || || | ||||| | Sbjct 889 ATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTG-AGCCATC 947 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||| |||||||| |||||||| || || || || Sbjct 948 CGACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 1007 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| || || || || || |||||| ||| | |||| || || || Sbjct 1008 GCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAA 1067 Query 24883 CATTCAAAAGGAATCGAC 24900 ||||||||| || || || Sbjct 1068 CATTCAAAAAGAGTCCAC 1085 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || || || || || || ||||| || ||| | Sbjct 661 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCA 720 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || ||||| || || ||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 780 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||||| ||||| | | | |||| || |||||| Sbjct 781 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAAC 840 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || |||||||| || ||||| | ||||| Sbjct 841 ATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGG 887 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || ||||| || ||||| || || || || || || ||| | Sbjct 205 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 264 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || ||||||||||| || || |||||| Sbjct 265 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCAA 324 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || || || || ||| | | | || ||||| ||| Sbjct 325 CAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAAC 384 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||||||||| || || || Sbjct 385 ATTCAAAAGGAATCCACCCTTCA 407 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || ||||| || ||||| || || || || || || ||| | Sbjct 433 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 492 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || ||||| || || ||||| Sbjct 493 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 552 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||||| ||||| | | | |||| |||||||| Sbjct 553 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAAT 612 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||||| || || || |||| Sbjct 613 ATTCAAAAGGAATCTACCCTTCATCTTG 640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| || || || || || ||| | |||||||| || ||| Sbjct 61 AAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAA 120 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA- 24906 || ||||| ||| | | | || || || || ||||| ||||||||||| || || Sbjct 121 CAACTGGAAGATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCAT 180 Query 24907 CTTG 24910 |||| Sbjct 181 CTTG 184 >seq271769 Length=1390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || || || || || || || || || || || || | Sbjct 660 GATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGCCCTC 719 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| || | || |||| || || || |||||| || || |||||||| || || |||| Sbjct 720 CGATACCATCGAGAACGTGAAGACCAA-GATCCAGGATAAGGAAGGAATTCCCCCAGATC 778 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||||||||||| || || || ||||| |||||| | | | | || || || | Sbjct 779 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGACGGACCCTCTCCGACTACA 838 Query 24882 ACATTCAAAAGG 24893 |||| || |||| Sbjct 839 ACATCCAGAAGG 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448274504428480