Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq49684 187 2e-42 >seq49684 Length=8088 Score = 187 bits (206), Expect = 2e-42 Identities = 238/326 (73%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 34308 CACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 ||| ||||| | ||||| ||||||||||| | | || | |||||||| |||||| Sbjct 4031 CACCATGAGGACCGTCTCGGGGTTGTCACACTTCTCGCAGAGAACAAACTTCTTGATGAA 4090 Query 34368 ACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTC 34427 ||||| || | ||||| | | || ||||||| |||||||||||| | || || Sbjct 4091 CCCATCCAGGATATCCTGGAGTCGATTGGCGTCGTGGAGTCCGTTGACGATGTAGCGGTC 4150 Query 34428 GTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTA 34487 ||| |||| || | | ||||| ||||||||||| || || |||||||| || | ||| Sbjct 4151 GTTCTTGTTGTCCGCGAGGGTTTGTGCGCCCAGCTCACAGCCAAAGTACTTAGTGGTGTA 4210 Query 34488 AATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGAT 34547 ||| ||| || || || | | ||| | || | ||||||| ||| || |||||||| Sbjct 4211 CGTGGGCGGCCGCCCCAGGGACCGGGCCACGTCCGCCATGTTGGGGATCACGGTCTTGAT 4270 Query 34548 GCCGTTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAAC 34605 |||||||||||| || || |||||||| ||||| || ||||||||||||||||| || Sbjct 4271 GCCGTTGCCCTTGCCCTCCACCTTGGCCTGCAGA--CGGGGCATTTTGTAGCGGTAAAAG 4328 Query 34606 GCGTCCGCCACATTGCGGTTAACGTT 34631 ||| ||| | ||||| ||||| Sbjct 4329 TTGTCATGGACACTTCGGTTCACGTT 4354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411389426575688