Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022070.1 Length=53588 Score E Sequences producing significant alignments: (Bits) Value seq1325 98.7 3e-16 >seq1325 Length=8454 Score = 98.7 bits (108), Expect = 3e-16 Identities = 144/200 (72%), Gaps = 13/200 (7%) Strand=Plus/Minus Query 40449 AACACCAAAAAGTACGAGTGGTTCTTGCGCGCGTGCTCCTGCTTTA--GTACGCGAACAA 40506 || |||||||| || |||||||||||||| || |||||||| |||| ||| ||| | Sbjct 6453 AAAACCAAAAAATAGGAGTGGTTCTTGCGAGCATGCTCCTGTTTTATGAGACGTGAA-AC 6395 Query 40507 TACCGGGGCGGTTCGACCGTGTAACGAC---GAACAGATCTTTGCAGTAGAAGTC---TT 40560 || || || | || | | ||||| |||||| |||||||||||||| | | Sbjct 6394 AACTGGCGCATTGCGCC----TCACGACAATGAACAGGTCTTTGCAGTAGAAACCCAGCT 6339 Query 40561 TCTCCCACTCATTAATTAACTCAATATGAGTGAGTCTCTGGCGATTCGCTGACACTTCGT 40620 |||| || | || ||||||| ||| || | | | ||||| |||||||| || |||| Sbjct 6338 TCTCATACGCCCAGATCAACTCAACATGCGTTAATTTTTGGCGGTTCGCTGATACCTCGT 6279 Query 40621 CCTGGCATTTGACGATGAAT 40640 | ||||| || ||||| ||| Sbjct 6278 CTTGGCACTTAACGATAAAT 6259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170772695301600