Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq35290 192 1e-43 seq288555 84.2 4e-11 >seq35290 Length=16627 Score = 192 bits (212), Expect = 1e-43 Identities = 293/412 (71%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 35454 GTCACACC-CGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC 35512 || ||||| ||| || || |||||||| || || |||||| ||| || | || || Sbjct 1685 GTTACACCACGT-TGCCCTTGGTATTTGCCTCCTCGATCCGCGTAAGAAGTGTCACAAAG 1743 Query 35513 CTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG 35572 ||| || || || ||||| ||||| |||||||| ||||| ||||| || | || || Sbjct 1744 CTCATCGCTTTCAAAAAATAGCATTTGCGCCACTCCTTCATTCGCATATATTTTTGCGGG 1803 Query 35573 CAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGG 35632 || ||||||||| || |||||||| ||||| || ||||| ||||| |||| || Sbjct 1804 TAGCGGGGTAGTGTTTGAAAATTCCAGAGTGACATGCCCCTCCCATTCAGGCTCCAAGGG 1863 Query 35633 CGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAG 35692 |||||| |||||||| || ||||| || |||||||||||||||||||||||||| | Sbjct 1864 CGTCACATTGACGATAATTCCACATCGAGCGTAGGTGCTCTTACCCAAACACACTGTTAA 1923 Query 35693 GACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGG 35752 || || || ||||| || || ||||| || || || || | ||| || ||| ||||| Sbjct 1924 CACATTTCGTGGAATCCGAAAATATTCCACTGTACGCGCTAAAGCAAACGAGTTTGGCGG 1983 Query 35753 AATCAGGATGC---TGTCAGCCTTAACCGGCTGCAGGCACTTG---GGATCGAAGTTCTT 35806 || ||||| | || | || || | || | | || || ||||| || Sbjct 1984 GAT---GATGCACGTATCGGACTGAA---TATCCACGAAACTGTCCGGGTCGAATGATTT 2037 Query 35807 CGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCA 35858 |||||||||||| || |||||| || ||||| | || | ||||||||| Sbjct 2038 CGGATCAACCACCGCATGGTTGATATTTGTGAAAATTTTGAATTCATCGGCA 2089 >seq288555 Length=1058 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 122774 TAGCTCAGTTGGTTAGAGCATCTGACTTTTAATCAGAGGGTCCTGGGTTCGAGTCCCAG 122832 ||||||||||||||||||||||||||| ||||||||||||||| |||||||| || || Sbjct 869 TAGCTCAGTTGGTTAGAGCATCTGACTCATAATCAGAGGGTCCTTGGTTCGAGCCCAAG 811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 822937139960640