Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq30401 141 1e-27 seq71246 136 6e-26 seq28030 104 4e-16 seq182767 96.9 5e-14 >seq30401 Length=510 Score = 141 bits (156), Expect = 1e-27 Identities = 144/186 (77%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||| ||| | | Sbjct 194 TGTACTTGGTGACGGCCTTGGTTCCCTCGGAGACGGCGTGCTTGGCGAGTTCTCCGGGGA 135 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 || || | |||||||||||||| || | || | ||| ||| | |||||| ||| Sbjct 134 GGAGGAGTCAGACGGCGGTCTGGATTTCCCAGGAGGTGATGGTGGACCACTTGTTGTAGT 75 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||||| | ||||| | |||| || |||| ||||||||||| || ||||| Sbjct 74 GGGCG--AGGCGAGAAGACTCGGCGGCGATCCGCTCGAAGATGTCGTTGACGAAGGAGTT 17 Query 1485648 CATGAT 1485653 |||||| Sbjct 16 CATGAT 11 >seq71246 Length=1158 Score = 136 bits (150), Expect = 6e-26 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||||||||| || ||| Sbjct 890 TGTACTTGGTGACGGCCTTGGTTCCCTCAGAGACGGCGTGCTTGGCCAGTTCACCAGGCA 949 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | || || || || || || |||| ||| ||| | |||| | | Sbjct 950 GGAGCAACCTGACAGCAGTTTGAATTTCCCGGGAAGTGATGGTGGAACACTTGCTGTAGT 1009 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || ||| ||| | | ||| || |||| ||||| |||||||| ||||||| Sbjct 1010 GCGCAAGTCGGGAATACTCTGCGGTGATCCGCTCGAAGATGTCATTGACAAAGGAGTTCA 1069 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||| ||| |||||||| |||||||| | ||||||| Sbjct 1070 TGATGCTCATGGCCTTGGAAGAGACTCCCGTTTCGGGGTGGACCTGCTTCATGACCTTGT 1129 Query 1485710 AAA 1485712 ||| Sbjct 1130 AAA 1132 >seq28030 Length=5412 Score = 104 bits (114), Expect = 4e-16 Identities = 220/327 (67%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| || | |||||| || ||| || |||||||| || |||||| Sbjct 1562 CCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTC 1621 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || |||| | || || ||||| || || || || ||||| ||||| Sbjct 1622 TTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAA 1681 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCC-AGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || ||||| |||| | | ||| || || |||||| ||||| Sbjct 1682 GCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGT----CCACTTTTGAGCCCA 1737 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | ||||| || | | || | |||| | |||| ||||||| | |||| || Sbjct 1738 AGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTC 1797 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | ||||||| |||||||| ||||| | ||||| | || ||||| |||||||| Sbjct 1798 CTCTTTATCCTTGATATAGGTGTCAATGAGTAATGAGTACATTTCAGAGTGAATGTTTTC 1857 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||||| ||| |||||||| ||||| Sbjct 1858 GATGGCGACCTGAAAGCCATAGAAGCA 1884 Score = 96.9 bits (106), Expect = 5e-14 Identities = 179/262 (68%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 ||||||||||| |||| || || | | ||||||| ||||| ||||| || Sbjct 1898 ACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCA 1957 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG---CGAGACC 796275 ||||||||||| ||||| || || || | |||||| ||||| | || | || Sbjct 1958 GCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCC 2017 Query 796276 CAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCC 796335 || | | || || || ||| || ||||| ||| | ||||| ||| ||| |||| Sbjct 2018 CAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCT 2077 Query 796336 TTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGG 796395 ||||||||||| | ||| || | |||| ||||||| | | |||||||| | ||| Sbjct 2078 TTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAAGGACGACAAAGCGTTGTGGG 2137 Query 796396 TTCTCGCGTAGCAGCGGCTCGC 796417 ||||| |||| || || |||| Sbjct 2138 TTCTCCTGTAGGAGAGGTTCGC 2159 >seq182767 Length=2084 Score = 96.9 bits (106), Expect = 5e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCG 2069676 || || || ||||| || || || | |||||||||| ||| | ||||| ||||| Sbjct 1679 AACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGATGCCCTCG 1620 Query 2069677 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTG 2069736 |||| |||||||| || | ||| | ||||||||||||| |||||| ||| || |||||| Sbjct 1619 TTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCAAGAGAAGGGAGTTG 1560 Query 2069737 CGCAGGCC 2069744 || ||||| Sbjct 1559 CGGAGGCC 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7885544999702424