Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq11950 143 2e-29 seq78081 109 4e-19 seq271769 104 2e-17 >seq11950 Length=2906 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| ||||| |||| ||||| || |||||| |||||||||||||| | Sbjct 889 TTCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGG 830 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| | || || || ||||| || ||||| || || || ||||| ||| | | Sbjct 829 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 770 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || |||||| | || | || |||||| | Sbjct 769 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 710 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || ||||||||||| || |||||||| ||||| || ||||| Sbjct 709 CTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCAT 661 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| ||||| |||| |||||||| ||||| ||||| || ||| |||| |||| Sbjct 1329 CAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATC 1270 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||||||||||||||||| || ||||| ||| | || | || || ||||| Sbjct 1269 CTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTC 1210 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | | || | ||| | ||| || |||| || ||||| Sbjct 1209 CTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGT 1150 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || || |||||||| Sbjct 1149 TTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 1117 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||| |||||||| | | | || |||| || |||||||| || ||||| Sbjct 1080 CTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAA 1021 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT-TTGACGG 34904 ||||| || ||||||||| | || | || |||||||| || | | || || || || Sbjct 1020 GATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC-TTGAATCTTAGTCTTCACAT 962 Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | | || | || | ||| || |||| || |||||||| || || || || || | Sbjct 961 TTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAA 902 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 901 CAAAGATCTGCAT 889 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | | ||| ||||| || |||| ||| ||||||||||| || ||||| | Sbjct 205 TTCCACCTCGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGG 146 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | || |||| |||||||| ||||| || ||||| || || ||||||||| | | Sbjct 145 AAAGAGTACGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGG 86 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || || ||||| || || |||| ||| | ||| Sbjct 85 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATCGTATCAGATGGCTC 28 Query 34927 GACATCAACGGTTATGGTCTTTCCCGT 34953 ||| || | || ||||||||||| || Sbjct 27 GACCTCGAGAGTGATGGTCTTTCCAGT 1 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | | ||| ||||| || |||| ||| ||||| ||||| ||||| || | Sbjct 661 TTCCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAG 602 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| | || || || ||||| || ||||| || || || ||||| ||| | | Sbjct 601 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 542 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || |||||| | || | || |||||| | Sbjct 541 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 482 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || || || || || || ||||| || ||||| ||||| Sbjct 481 CCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 433 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | ||| || || || |||| |||| ||||| |||||||| || || | Sbjct 433 TTCCTCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGG 374 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | || |||| || |||||||||||||| ||||| || || || || ||| | | Sbjct 373 AGAGAGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGG 314 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || || |||||| | || | || |||||| | Sbjct 313 GGATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 254 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || || || || || || ||||| || ||||| ||||| Sbjct 253 CCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCAT 205 >seq78081 Length=4256 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || |||||||| |||||||| ||| | || |||| || || ||||||||||| |||||| Sbjct 2977 TTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATC 3036 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | || || || ||| | || | |||||||| || | ||||| || || | | Sbjct 3037 AAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCG 3096 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | ||| || ||| || || | ||| ||||| || |||||||||||||| || || Sbjct 3097 ATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAA 3156 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 3157 ATCTGCAT 3164 >seq271769 Length=1390 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| | || |||| || || ||||| || ||||||| Sbjct 850 CCTTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGA 791 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || ||||| ||| | || | || ||||| || | || || || ||| Sbjct 790 TCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCT 731 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || || ||| || |||| ||| |||||||| |||||||||||||| || | Sbjct 730 CGATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 671 Query 34968 AGATCTGCAT 34977 |||| ||||| Sbjct 670 AGATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324547173133304