Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq221573 95.1 3e-15 >seq221573 Length=809 Score = 95.1 bits (104), Expect = 3e-15 Identities = 183/269 (68%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 14177 CATGGCGTCGAGGTTATCGAAATCGACGCCGGCCCACGCCCGATTACCACCGTTCGAACC 14236 || ||||||||||| |||||||||| ||||| | || || ||| || || || || Sbjct 389 CACGGCGTCGAGGTCGTCGAAATCGATACCGGCACCCGGCCCATTCAAACTGTCCGCTCC 330 Query 14237 AGCGTCATCGGCATTGTCGGAACTGCGCCAAATGCTGATGCTGCCGCATTCCCACTGAAC 14296 || ||||| ||||||| || ||||| ||||| |||| || | ||| ||||| ||| Sbjct 329 TCTGTGATCGGTCTTGTCGGCACCGCGCCCAATGCGGATGGTGACAAATTTCCACTTAAC 270 Query 14297 ACCCCTGTGCTGGTTGCCGGCAGCCGTCGCGAAGCCGCGAAGCTGGACCTGCTGGGCACT 14356 || || || || | || || | || ||| ||||| ||||| ||| | | Sbjct 269 ACGCCAGTTTTGATCGCGGGTAAGCGCACCGAGGCCGCTAAGCT--------TGGTC-TT 219 Query 14357 GGCGAGGGCACCCTGCCTGCCGCTATGGACAGCATCTTTGACCAGGCCGGCGCCGTCATC 14416 | | |||||| |||| | || || || |||||||||| || ||||| |||| Sbjct 218 GTC---GGCACCTTGCCCGGTGCCATTGATGATGTCTTTGACCAAGCTGGCGCAATCATT 162 Query 14417 ATCGTGGTCCGCGTCGAGGAAGGCGAAAC 14445 || ||||| || ||| || |||| ||| Sbjct 161 ATTGTGGTGCGGGTCTCTGAGGGCGCAAC 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138805832599392