Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11950 163 2e-35 seq78081 107 1e-18 >seq11950 Length=2906 Score = 163 bits (180), Expect = 2e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 ||||| || | | |||||| ||||| ||||| |||||||| || || ||||| || || Sbjct 1346 TGTCCCCCACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 1287 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | ||||||| ||| |||||||| || || || | ||||| | |||||||| || Sbjct 1286 GAGAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGG 1227 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 ||||| || |||||||| || | | || || |||||| |||| | ||||||||| | || Sbjct 1226 GGAATTCCTTCTTTGTCCTGGA-TCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTC 1168 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| || ||||||||||| | ||| || || || ||||||||| Sbjct 1167 AACCTCAAGAGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 141 bits (156), Expect = 7e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || | ||| || || ||||| | ||||| |||||||||||||| || |||| Sbjct 1116 TCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGA 1057 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| || ||||| |||||||| | ||||| | ||||| || || || Sbjct 1056 CAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 997 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| ||| || || || ||| |||| | ||||| || | || | Sbjct 996 AATTCCTTCCTTGTCTTG-AATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAA 938 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || || || || | ||||||||||| ||||||||| Sbjct 937 CCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 138 bits (152), Expect = 9e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | ||| ||||| ||||| || || || |||||||||||||| || | Sbjct 888 TCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGA 829 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||||| || || || || |||||||| | || | | |||||||| || || Sbjct 828 CAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGG 769 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| |||||||| ||| || | ||||| | || | ||||| || || | Sbjct 768 AATTCCCTCCTTGTCTTG-AATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 710 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||||| || || || ||||| | ||| || ||||| || |||||| Sbjct 709 CTTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || ||||| |||||||| |||||||| | | ||||||| || Sbjct 644 AGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCC 585 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || |||||||| | || | | |||||||| || ||||| ||||| |||||| Sbjct 584 TCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 525 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||||| | || | ||||| || || || || || || || || Sbjct 524 TG-AATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGT 466 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||||| || || || || || |||||| Sbjct 465 TTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| |||||||| ||||||||||| ||||| | | || || ||| Sbjct 416 AGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCT 357 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || || ||| | || | | || ||||| || || || || ||||| || Sbjct 356 TCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCC 297 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||| | || | ||||| || || || || || || || ||| Sbjct 296 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTT 237 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||||| || || || || || |||||| Sbjct 236 TTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 >seq78081 Length=4256 Score = 107 bits (118), Expect = 1e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||||||||| || |||| || ||| || ||| ||||| || || || ||| | | Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTT 29715 |||| | || ||||| || || || ||||| || ||||| ||||| || || ||| || Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTG-GATTTTGGTCTTAACATTT 3093 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || ||||| | || || || || || || ||||| || || | ||| ||||| Sbjct 3094 TCGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACG 3153 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 3154 AAAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383864188574856