Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023556.1 Length=72329 Score E Sequences producing significant alignments: (Bits) Value seq121188 205 4e-48 seq76541 199 2e-46 seq282583 147 1e-30 seq266624 143 1e-29 seq282581 96.9 2e-15 seq121189 86.0 3e-12 >seq121188 Length=15723 Score = 205 bits (226), Expect = 4e-48 Identities = 919/1419 (65%), Gaps = 52/1419 (4%) Strand=Plus/Plus Query 67105 TGGCTTCCAAGGATTCAGGTACGCCAACTGACTGATCGTATCAATGCAGTCATCCTTACC 67164 ||| ||||| | |||| | | |||| | ||| ||||| | ||||||||||||||| Sbjct 249 TGGTTTCCATGCGTTCATTTCTGTCAACATAGAGATGGTATCGAGGCAGTCATCCTTACC 308 Query 67165 CTTGAGTCCATTTGTAGTTGCCAGACGAATCTGGCCCATAAATATTCCCATGATATTGGA 67224 || | |||| | | || |||| | ||||| |||| || | |||| || ||| Sbjct 309 TTTCAAACCATCTTTGGTAGCCAAAGAGATCTGTTCCATGAACAAGCCCA-GAACTTGAG 367 Query 67225 CGTCTTGAGT-TCAGAAGGAAAAAACATCTTACCCATCTTGAACCAAGGAACTACGAGGT 67283 |||| | || | || || ||||| || ||| || |||||| || || | Sbjct 368 TATCTTTCATCTCCAAGGGGAACTTGATCTTTCCAGCCTTAAATAGAGGAACAACCAGAT 427 Query 67284 TAAACCGGGACAGCTTATTGGTGACAGGGCGGATACCCGGTTTCCCGGACTGCTCCGACG 67343 |||| | ||| |||| || | || |||||||||||||| || ||||| | Sbjct 428 TAAATCTACTCAGTTTATCTGTCATGGGTCGGATACCCGGTTTACCCTTCTGCTGGG--- 484 Query 67344 ATGCAAAGGTGAACCAGATGTTCCTGGTCATC-ATCTCTCGTTGTAGCAA--GGACACGA 67400 ||| | |||| | || ||| ||| ||| || || || | | | ||| | | Sbjct 485 ---CAAGGTTGAAGTAAATACTCC-GGTAATCCATTTCACGCATGATCCATTGGATA--A 538 Query 67401 AGCCAAACTGCTGACCCGTGGTTTCCACACCTACCGATTGTGGCCGATATTCTTGGGCGA 67460 | ||| ||||||||| || | || ||||| || ||||| || || | | | Sbjct 539 ACCCACCCTGCTGACCAGTAATCTCAACACCGACGCTCTGTGGATTGTACTCCTCAACCA 598 Query 67461 AGCGAAAGAGGCGGTCATACGTTTTTTCCATCGTCTCCCGCTCGCAACTACCATCCACCC 67520 | ||||| | ||| | | ||||| |||| || | ||| ||| || |||| Sbjct 599 AACGAAACAAATCGTCGATTGAGGTATCCATTGTCTGTCGAGCACAAACACCGTCAACCC 658 Query 67521 AGAACCAGTCGCCATTGGCATTGTAAGCCCAGACAGAGATTACCGTGTAGTCGGCGGTCT 67580 || ||| || ||||| | | || ||||| || || ||| | || || || || | Sbjct 659 AGTGCCAATCCCCATTCGAGTCATACGCCCATACTGATTGTACGGAATAATCCGCAGTTT 718 Query 67581 GCTTGTCAGAGGTAGCAAAGTCAGTGGTGATGTAGAAGTTGTACTGGCTCTTCATCCGCA 67640 | || || || ||||||||||||||||||||||| || || | |||| || | Sbjct 719 GTTTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAA 778 Query 67641 GCAACTGCTGACGGCTGTACCACTGAATCTCCCCTTCTTGCACCAGACGTTCTTCCTCGG 67700 | | || | || | |||| || || ||||| || |||| ||| || || Sbjct 779 GGATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCAT 838 Query 67701 ACGTGATGCGCAGCATCAGTTCCTGGTTGAA-GCCTGAGACCTTGCCC-GT--CTTGACG 67756 | || || ||||| || ||||| ||| | || | | || || || ||||| | Sbjct 839 CCTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCA-AGTTTACCTTGTTGCTTGAAG 897 Query 67757 GCCATGTCGTACTGGTCCTTGACGTACTGGTAGCTGAAGCGATCTTCCCAGGCACCCACG 67816 | |||||| | || || | | | |||| | || || ||| ||| || | Sbjct 898 ---AAGTCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGG 954 Query 67817 AATTC-TTCTTTGGGGCAGGGGAACTTCTCGCACACCGGCCAGACGTTCACCGACCAGGC 67875 || || ||||| |||| |||| || ||||| ||||| ||||||||| ||| || Sbjct 955 AAATCCTTCTTATCAACAGGA-AACTCCTTACACACTGGCCAAACGTTCACCTCCCATGC 1013 Query 67876 CCCCGATTCCACGGCTTCGAT-CATGATGTCGTTCTTGTTGAATGGCGTACCGTTGAAGA 67934 || || || | |||| ||| || |||||||||||||| ||| || || || || | | Sbjct 1014 ACCAGACTCGATTGCTT-GATACACGATGTCGTTCTTGTCGAAGGGAGTCCCATTCAGAA 1072 Query 67935 TCA-CTTTGCGGCGTGTGGGATCGAGAGCGTGGTTCACGCCCTTGTACACCGTGTCCTTG 67993 | ||||| |||||| | |||||||||| | |||||||| || || || || Sbjct 1073 TAGTCTTTGACTTTTGTGGG-TGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTA 1131 Query 67994 ATCGACTGCATAGCGGCCGGGGACTTGGCGTCATCATCAGACACCAAGTCGTCCAGGA-T 68052 ||| | ||| || | || ||||| || || ||||| || | |||||| || || | | Sbjct 1132 ATCTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACT 1191 Query 68053 ACAGAGCACCGGACGCTTACCGAAAATCTTGGAACCACGAAGACCAGTCTTCGCACCGAA 68112 || ||| || || ||||| || ||||| | |||||| | ||||| ||| |||||||| Sbjct 1192 GCA-AGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCGAA 1250 Query 68113 CATCTTGCAGCCCAGTCGATGGCCGGACTTGGACTTGAACTCCAGATAGTTGTCCGTGA- 68171 ||| | | ||| | | | || | |||||||||| ||||| || |||| Sbjct 1251 CAT-ACGGACACCAAAC-TTATTCCNNCTACG--TTGAACTCCATGTAGTTCTCTGTGAT 1306 Query 68172 -AGA----TGGCGTGAGGAATCCACTCCTGAAGGAAAGGAGAGTTGTCGTATCGGAACTC 68226 || || | || ||||| | ||| || || || ||| || || | Sbjct 1307 CCGAACCCCAGCTTCTGGCATCCAGTGCTGGAGAAACTCCGAAGAGTCATAACGAGATCG 1366 Query 68227 AATGTTCTTCCGTGCGGACTTCACACCGTTGTCCATGGAGTCAGACACGTAGATCATTGC 68286 || || || |||||||||||||| |||||||||||||| || | || | || ||| Sbjct 1367 GATCGACTCACGAGCGGACTTCACACCATTGTCCATGGAGTCCGAAATATACAACA-TGC 1425 Query 68287 GTCAATACTT--CCGAAGTTGGGAAGCTCACCGAACACTGCCAGGAACAGAACG--AAGT 68342 | |||| || || |||||| | | ||||| ||||| | | |||| | || Sbjct 1426 -TTTGGACTTTCCCAAAACCGGGAAGATGATTGAACATCGCCAG--ATACAACGTCATGT 1482 Query 68343 ATTCCATGAACAGAGTTGTCTTAGCAGCACCCCGGAAACAGAGATTGGCAAT--GTACTC 68400 |||| | ||||| ||| || || |||| ||| |||||||| ||||||| ||| || || Sbjct 1483 ATTCAAAGAACAAAGTGGTTTTCGCAGAACCACGGAAACACAGATTGGTAATCCGT-TTC 1541 Query 68401 GTTTGGTTCAGTGAGCTTGTCCAGCATCTTCAGGTGAACTGGGGGAGTCTTGTTGGACTC 68460 | |||| || | ||||||| ||| ||||| | | ||||| |||| ||| Sbjct 1542 TTGCTGTTC-GTCACTTTGTCCAACATGGCAAGGTGCATGGAAGGAGTTTTGTGCTCCTC 1600 Query 68461 TCCTTGTGCACCATTCACCAACTTGATGAAGTTCATGAA 68499 |||| | ||||||||| |||||||||||||||||| Sbjct 1601 CCCTTTACCGTCATTCACCAGCTTGATGAAGTTCATGAA 1639 >seq76541 Length=11138 Score = 199 bits (220), Expect = 2e-46 Identities = 298/417 (71%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 29507 GATCTATCACAATG-CAGCATTTGACATGTACATCCTGGTCTACCAGTTGTTCATGGCCG 29565 |||||||||||| | || | |||| | || | ||| | || |||||||| |||| Sbjct 714 GATCTATCACAACATCTGC-TATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATC 656 Query 29566 ATCTCATTGACACGGAAGGCATGCTCGAAGGATTCGAGATCATGATGCGTAATTGGCATT 29625 | || ||||| || || ||||||||||| | || || | | || || ||| | | Sbjct 655 ACATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAAT 596 Query 29626 GCACTAAGCTGATCACGTATCTCGCCACCAACTCTTGTGCGGGCAACAAGCTGGGCCTGA 29685 | || |||| ||||||||||| |||||||| || ||||| || ||| || |||| |||| Sbjct 595 GTACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGA 536 Query 29686 AGGACCAAGCACAGGAATTTGCGGGGAACTATGCGGAGTCGGAAATCCACGACATCACAC 29745 ||| || || ||||| || || || |||||||| | || ||||| |||||||| | Sbjct 535 AGGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGC 476 Query 29746 GCATCCCGCTACCGAAGCTGTTGCAGTACAACCTTGTGGACTGTCTGTCCACTTGGCACG 29805 ||||| || || ||||| ||| | |||||||| ||||| | || || |||||| | | Sbjct 475 AGATCCCTCTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATG 416 Query 29806 TCTACGATAAACA--CTTCGGAACCATGGTTGC---CGATCAGCAGTTGGATATCTACGA 29860 ||||| ||||||| ||| || ||||| || ||||||| | | | ||||||| Sbjct 415 TCTACAATAAACATCATTC--CACGATGGTCGCAGACGATCAGGAAT---ACATCTACGT 361 Query 29861 GACGCTGTTCAAGACAGCATCGAAGGACATCATCCAGATGCAATTGACCGGCATGCC 29917 ||||||||| | || || |||||||| || ||||| ||||| || ||||| Sbjct 360 TGAGCTGTTCAAAAAGGCTGTGATCGACATCATTCAAATGCAGTTGACGGGTATGCC 304 >seq282583 Length=1909 Score = 147 bits (162), Expect = 1e-30 Identities = 425/636 (67%), Gaps = 26/636 (4%) Strand=Plus/Minus Query 30666 TATGATGGTCACTGTCTCCGTGCATACACTTACTTCGGTGAGTTGATGAACGGCATTGAC 30725 |||||||||||||| || || || ||| |||| || || ||| | ||| | || ||| Sbjct 1444 TATGATGGTCACTGCCTACGAGCTTACTCTTATTTTGGAGAGGTTATGGGTGATATCGAC 1385 Query 30726 CCTGACTCGGTGGCGAGCATCAATTCCATTGAGAACCTGTACAAAGACTTGCGTCAGGAG 30785 ||| || || | |||||||| || |||| ||| ||||| | | | || || Sbjct 1384 CCTACTTCAGTCGATAGCATCAACTCGATTGCGAAGAAATACAAGCAGCAGAGACAAGAC 1325 Query 30786 TCGAAAGCTCCGACGTTTGCTTTGACCTATCAGGGTACGTACATCACGCTGATGAAGAAC 30845 || |||||||| || || || |||| |||||||| || ||||| || |||||||| ||| Sbjct 1324 TCTAAAGCTCCAACCTTCGCACTGACATATCAGGGAACTTACATGACCCTGATGAACAAC 1265 Query 30846 TGTGGCTTCTCGGAAGATAAGGC-AAAGCGAATCGA-AGCTCGATACCACGAGATGTATG 30903 ||||| ||| | || ||| |||| ||| || | | | |||| | ||||||| | Sbjct 1264 TGTGGTTTCAGCAAGGAATTGGCTCAAGC-AATTGAGAACGC-ATACAAGAAGATGTACG 1207 Query 30904 TGGTCAGTACCGAATGGGTGCAGGCAAGACTGGATGAAGCGGCGAAAGTCGGCTACATCA 30963 ||||| | | | |||||| | | ||||||| |||| | || | |||||||||| Sbjct 1206 TGGTCTCGATCAACTGGGTGAATGACCGACTGGAACAAGCCACCAAGGATGGCTACATCA 1147 Query 30964 CCACAGCCTTTGGATTGCGAGTTCGCACTCCCCTGCTGTATCA---GGTCATCCGTGGAA 31020 | ||||| || | |||| | || || || ||| | || |||| || | Sbjct 1146 CTGTGGCCTTCGGTCTCAGAGTGAGAACACCTCTTCTGAAGCAAACGGTCCTC---AACA 1090 Query 31021 CCAGCAAGACGCCGTATGAGGCCGAAGCAGAAGGACGCACCGCTGGCAATGCTCTAGGGC 31080 | | || || || ||||||| |||||| || | || || || || || | || | Sbjct 1089 CGGGTAAAACCCCCAGAGAGGCCGCAGCAGAGGGTAGAACAGCAGGTAACGCAATGGGTC 1030 Query 31081 AGGGCTGGTGTCTCCTGAATAGTCGTGCTTGGGTC-GAGTTCATGGGCAAGGTACGTGCA 31139 || || || | |||| | ||||| || || || |||||||| ||||| | | | Sbjct 1029 AGTCCTATTGCATGTTGAACAACCGTGC-TGCTTCTGAATTCATGGGTAAGGTTC--GAA 973 Query 31140 AG-CG-ATCAACGCTTGAACATCCGCCCGTGTGCACAGATTCACGATGCAGGCTA-TGCA 31196 || || | | || || ||||| || ||||| || || ||||| || || | | Sbjct 972 AGTCGAAGTATCGACTGGACATCAAACCATGTGCTCACATCCACGACGCTCAATACTACC 913 Query 31197 TTGATCCGTGACGA------TATGGATACCGTCATGTACATGAACGAGCATCT-CGTTCA 31249 ||| |||||||||| |||||| | | ||||||||||| |||||||| | | Sbjct 912 TTG-TCCGTGACGAGGGTTCTATGGAACCTCTGATGTACATGAATGAGCATCTACCCAAA 854 Query 31250 GGCGGTGAACTGGAATGATCACCCTGACATTTACCA 31285 | || || | ||| | ||| |||| || |||||||| Sbjct 853 GCCGTTGCA-TGGCAGGATGACCCAGAGATTTACCA 819 >seq266624 Length=731 Score = 143 bits (158), Expect = 1e-29 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 60409 ACATACTGCTGGTTGGTCACACGCACCACTTCTTCTTCTGAAAGGAAGAGAGAGTTCATG 60468 ||| ||| | ||| ||| |||| || ||||| | ||| | ||| ||| ||||| Sbjct 326 ACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCATTCATT 385 Query 60469 GCGATGATCTTGTTGCCGA-CTTCCGTCATGCCCTTGGCAAGACGACGCAGGATGGCCAT 60527 ||||||||||| | |||| |||| | ||| || ||||| |||||||| | ||| ||| Sbjct 386 GCGATGATCTTCTCACCGATCTTCTG-CATACCTTTGGCCAGACGACGAACAATGCTCAT 444 Query 60528 CTCACGCTTGGAAGACGCATCCAGAACACCACGGATACCAGCAGCCACGTCACCGTAGGC 60587 ||| || || | | |||||| |||| |||||||||| || ||| ||| || || Sbjct 445 CTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACCATACGC 504 Query 60588 TTCACCAGACACACCACCGGCAAAGGACTTCACACCAGTCAGTGCTTCCGCTTCTTGGTT 60647 |||||||| | |||||||| || || ||||| || || |||||||| ||||||||||| Sbjct 505 ATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTCTTGGTT 564 Query 60648 CTG 60650 ||| Sbjct 565 CTG 567 >seq282581 Length=1216 Score = 96.9 bits (106), Expect = 2e-15 Identities = 239/360 (66%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 33762 CCGTTCACGTTCGACAGTGGAACCACACCGGCAGTCAAACAGCTTCGTCAGAAGTTGCTG 33821 ||||||| |||||| |||||| || || || || |||||||| | ||| | ||| Sbjct 704 CCGTTCATCTTCGACTCAGGAACCGGGCCTGCTGTGAAGCAGCTTCGATACAAGCTCCTG 645 Query 33822 CTTGCTACGTGTGGTTCCATCAACCTCCAGATTGATGAGATTGGTTCCAACC-TCATCGA 33880 | || | | |||||| |||||| ||||||| |||||||| |||||||||| ||| | Sbjct 644 TTGGCCAAGAATGGTTCGATCAACTTCCAGATGGATGAGATCGGTTCCAACCTTCAAGGC 585 Query 33881 ACAGACGGAAGTGCTGACCTTGTTCCTGGAGCTTTACGATCAGGGACTGGTCAAGCAGAA 33940 | | || |||||||| | | | |||||||| ||||||| || |||| || Sbjct 584 A-ACACTGAAGTGCTCAACACACTTCTGGAGCTATACGATCTTGGTAAAATCAAAGCCAA 526 Query 33941 GCTGACCAAAAACACTGCGGAGAACACCCGTGGTGAAGAACTGGACGGCAAGACTCCGGC 34000 ||| ||||| || |||| || || ||| || | | || ||| || | Sbjct 525 GCTCGTAAAAAATACCCCGGACAATGAACGGGGTATGGACATCGTGGGTTCGACACCTTC 466 Query 34001 CAACATGTTGTTGTTCGGAACTCCGTCGAAGCTGCTGGATGGCGGCCAGACCGAAGATGC 34060 ||| | ||| ||||||| || || ||||| | || || | | | || || | Sbjct 465 GAACGTATTGATGTTCGGCACCAGCTCAAAGCTCTTTGACGGTGCTAAAATTGAGGAGGA 406 Query 34061 CTTCTATGGCTTCTTGGACACTGGCTATGCACGTCGCTGCCTGTTCGGTATCGGCCAGCC 34120 || || |||||||| || || ||||| || ||||| | ||||| ||||| |||| Sbjct 405 GTTTTACTCCTTCTTGGCGACGGGTTATGCTCGACGCTGTTTCTTCGGGATCGGGAAGCC 346 >seq121189 Length=2370 Score = 86.0 bits (94), Expect = 3e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 17199 CGCTTCACCATCGCATCGGCTGTGGAAGAATTCCGCATGCCGAGCA-ACCTGACCGGTAT 17257 ||||||| | || ||||| | ||||| ||| |||||| || | | ||| ||| | Sbjct 1736 CGCTTCAATCTGGCTTCGGCCATTGAAGAGTTCAACATGCC-AGTAGATCTGGTTGGTGT 1794 Query 17258 CGTTCATGACAAGTCCACTTGGGCACGTCGTGGACTGTCCGTCTTCAACACCGTCATCGA 17317 ||||| ||||| ||||||||||| | ||||| ||| || |||||||| |||||||| Sbjct 1795 TGTTCACGACAAATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGA 1854 Query 17318 GCCGGGTTGGGATGGGTTTCTCACCCTGGAGTTGGTCTACCATGGTTCCACTGGCTTGTT 17377 ||||||||| | || | | || | ||| | || || || ||| | || | Sbjct 1855 ACCGGGTTGGAAAGGTCATTTAACATTAGAGCTTGTTTATCACGGTAGCGAGGGTATACA 1914 Query 17378 CATCCC-TCCGGGTGTGGGCATTGCTCAAGTGGTGTTCCA 17416 ||||| || || ||| || |||||||||||| | || || Sbjct 1915 TATCCCATCAGGATGT-GGAATTGCTCAAGTGCTATTTCA 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230514302025040