Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023579.1 Length=75568 Score E Sequences producing significant alignments: (Bits) Value seq121188 199 2e-46 seq76541 199 2e-46 seq282583 183 1e-41 seq266624 161 5e-35 seq121189 129 3e-25 >seq121188 Length=15723 Score = 199 bits (220), Expect = 2e-46 Identities = 828/1280 (65%), Gaps = 46/1280 (4%) Strand=Plus/Plus Query 72368 GGGAAGTAGATTTTTCCTGCCTTGAACCAAGGAACAACAATATTAAATCGTGTCAATTTA 72427 ||||| | ||| ||||| ||||| || ||||||||| | |||||||| ||| |||| Sbjct 385 GGGAACTTGATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTA 444 Query 72428 TCGGTGACTGGACGGATGCCCGGCTCACCAGATTTGGCAGATGAAGCAAAGTTGAACCAG 72487 || || | || ||||| ||||| | ||| || | | || |||| |||||| | Sbjct 445 TCTGTCATGGGTCGGATACCCGGTTTACCC---TT--CTGCTGG-GCAAGGTTGAAGTAA 498 Query 72488 ACATTCCTGATCATC-ATCTCACGCTGAAGCCATTGTATAAACGCATTTTGTTGTCCGGT 72546 | | ||| | | ||| || |||||| | |||||| |||||| || || || || || Sbjct 499 ATACTCCGG-TAATCCATTTCACGCATGATCCATTGGATAAACCCACCCTGCTGACCAGT 557 Query 72547 TACTTCGATACCGACAGCT-TGTGGTTTGTACTGCTGGCACAGTCTGAACAGGTCATTAA 72605 | || | |||||| ||| ||||| ||||||| || || | |||| || | | Sbjct 558 AATCTCAACACCGAC-GCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGA 616 Query 72606 TATTCTTGTCCATAGTCTGACGTTTAACAATGCCATCGACTAAGAACCAGTCACCATTGG 72665 | | ||||| ||||| || | || || || || || ||| || ||||| | Sbjct 617 TTGAGGTATCCATTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCG 676 Query 72666 AGTTAAAGCCCCACACAAAGATAACCGAGTAGTCGGCTGTCTGTTTGGCTGAGGTGGCAA 72725 ||| | | |||| || | || || || || || || ||||| | || ||||||| Sbjct 677 AGTCATACGCCCATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAA 736 Query 72726 AGTCAGTGGTGATGTAGAAGTTGAATGTCTGCTGGTTCTCGATTAACAGTGACCGGTCAT 72785 ||||||||||||||||||| || | || || |||| | | | || ||| | Sbjct 737 AGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGGATGTGTTTCCGTTGGA 796 Query 72786 ACCAACGCATATCCGAATCCTGAACCAGACGTTCCTCTTCAGAGGTAATGCGAAGCATCA 72845 |||||| || || |||||||||| ||| ||| ||| ||| |||||||| | Sbjct 797 ACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCATCCTGAATCCGAAGCATAA 856 Query 72846 GCTCCTGCATGAA-GCCTGA----TACCTTGCCTGTCTTGACTGCCATGTCCCACTGAGC 72900 ||||||| ||| | || | ||||||| | ||||| | ||| | | | Sbjct 857 GCTCCTGACGGAACGACTCAAGTTTACCTTG--TTGCTTGA---AGAAGTCGTAATCCTC 911 Query 72901 TTCGATGTACTCGTAAGGGAAACGGTCTTCCCATGC-ACCGACAAACTCTTCACGGGTAC 72959 || | | ||||| | ||||| ||| |||||| ||| |||| || Sbjct 912 TTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAAC 971 Query 72960 AAGGCCAGCGTTCACAGACAGGCCATACGTTTACATCCCATGCACCTGATTCAACGGCTT 73019 ||| | | ||| || ||||| ||||| || ||||||||||| || || | |||| Sbjct 972 -AGGAAACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTT 1030 Query 73020 CGATA-AGAATGTCGTCTTTGTTAAATGGCGTACCATTGAAGATTACCTTTCTCTTCGTT 73078 |||| | ||||||| |||| || || || ||||| | || |||| ||| | Sbjct 1031 -GATACACGATGTCGTTCTTGTCGAAGGGAGTCCCATTCAGAATAGTCTTTGACTTTTGT 1089 Query 73079 GGATCCATTGCGTGGTTCACGCCTTTATATACGGTGTCCTTAATGGCTT--CCATTGAGA 73136 || | | ||||||| | || || || || || || ||||| ||| |||| | Sbjct 1090 GGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCATCGCAG 1147 Query 73137 CACGGGATTTGGAGTCATCATCTGATACTAAGTCATCCAGCACACAGAGCACAGGACGCT 73196 | || || | || |||||||| | |||||||| || || ||| ||| || | Sbjct 1148 TTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCGAAGGTCGTT 1207 Query 73197 TACCAAAAATCTTCGTACCACGAAGACCTGTCTTAGCACCGAACATCTTGATACCCAGTC 73256 ||||||| |||||||||||||| | ||| | ||| ||||||||||| || | ||| | Sbjct 1208 TACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACA-CCAAAC 1266 Query 73257 TGTGGTTTCC--CT-TGTTGGCAAACTCAATATAGTTGTCAGTG------AACTTAGCAA 73307 | |||| || |||| ||||| || ||||| || ||| | | ||| Sbjct 1267 T---TATTCCNNCTACGTTG---AACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTT 1320 Query 73308 CCGGGAGCCACTCTTGAAGAAACTCAGAGCTGTTGTATCGGAACTCAATGTTCTTTCTTG 73367 | || | ||| | || |||||||| || || || || | || || | | Sbjct 1321 CTGGCATCCAGTGCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAG 1380 Query 73368 CAGACTTAACGCCGTTATCCATTGAGTCTGAAACATAGATCATTC-CAGTAATGTCACCG 73426 | ||||| || || || ||||| ||||| |||| ||| | ||| | | | | || || Sbjct 1381 CGGACTTCACACCATTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTC-CCA 1439 Query 73427 AAGTTTGGAAGTCCACCGAACATAGCAATGAATGGTGCAAAGTATTCCATAAACAAAGTT 73486 || ||||| | |||||| || | | | | |||||| | |||||||| Sbjct 1440 AAACCGGGAAGATGATTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTG 1499 Query 73487 GTCTTTGCTGCACCACGGAAACAGAGATTGGCAATGTACTCACTACCACTAATCACTTTG 73546 || || || | |||||||||||| ||||||| ||| | | | | |||||||| Sbjct 1500 GTTTTCGCAGAACCACGGAAACACAGATTGGTAATCCGTTTCTTGCTGTTCGTCACTTTG 1559 Query 73547 TCTAACATGGCAAGGTGTACAGGTGGAGTAACGTTAGACTCTCCTGTTCCACCATTGACC 73606 || |||||||||||||| | | ||||| || ||| ||| | || |||| ||| Sbjct 1560 TCCAACATGGCAAGGTGCATGGAAGGAGTTTTGTGCTCCTCCCCTTTACCGTCATTCACC 1619 Query 73607 AGTTTAATAAAGTTCATGAA 73626 || || || ||||||||||| Sbjct 1620 AGCTTGATGAAGTTCATGAA 1639 >seq76541 Length=11138 Score = 199 bits (220), Expect = 2e-46 Identities = 298/423 (70%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 30458 GATTTATCACAATATCGCCTATGACGTTTACGTATTGATTTATCAACTCTTTATGGATGA 30517 ||| |||||||| ||| |||||||||||| || |||||||||| | ||||||||| | Sbjct 714 GATCTATCACAACATCTGCTATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATCA 655 Query 30518 CCTTCTGGACACATCCGGCCTACTTACAGGCTTAGATGTGATGCTCAGAAACTGGGATGA 30577 | | || ||| | || | || ||| | || || | || | |||||||| Sbjct 654 CATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAATG 595 Query 30578 TACAAAGCTGATCACTTATCTGGCGACGAATTCGTGTGCTGGAAACAAGTTAGGCTTGAA 30637 |||| |||| ||||| |||||||| || ||||| |||||||| ||| |||| || |||| Sbjct 594 TACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAA 535 Query 30638 AGACCAGTCACAGGAATTTGCTGGCAACTATGCTGAGGAAGGTATTAAGGATATCCGTAA 30697 | ||| | ||||| || || || |||||||||| |||| || | || ||| | Sbjct 534 GGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCA 475 Query 30698 TATCCCTCTGGATCAGCTGCTGCAATATAACCTCGTGGACGGTCTGTCAACGTGGTATGT 30757 ||||||||| |||| || |||| ||||||||||| || || || || |||||||| Sbjct 474 GATCCCTCTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATGT 415 Query 30758 GCATAACAAACACTGGGATACGATGGTTGCTGACCAGCAGGAGCATATCTATGCCACCCT 30817 | || ||||| |||||||| || ||| | ||||| | ||||| | || Sbjct 414 CTACAATAAACATCATTCCACGATGGTCGCAGACGATCAGGAATACATCTACGTTGAGCT 355 Query 30818 GTTCCAGCCAGCAACCAAAGACATCATTCAAATGCAGCTCACTGGTATGCCACTGAACAT 30877 |||| | || | |||||||||||||||||| | || |||||||| | ||||| Sbjct 354 GTTCAAAAAGGCTGTGATCGACATCATTCAAATGCAGTTGACGGGTATGCCCATCAACAT 295 Query 30878 GAA 30880 ||| Sbjct 294 GAA 292 >seq282583 Length=1909 Score = 183 bits (202), Expect = 1e-41 Identities = 607/942 (64%), Gaps = 49/942 (5%) Strand=Plus/Minus Query 31329 AATGATGGTTGGCATTATCTGTTCGGTAACTTCAACCTCGGTGGAACGTTATCAGGGCGG 31388 || ||||| ||||||||| ||||||||||||||| || ||||| ||| |||| || || Sbjct 1689 AACGATGGCTGGCATTATTTGTTCGGTAACTTCAGACTGGGTGGCACGCTATCTGGTAGG 1630 Query 31389 TTAAGCTCATCCGATCCAAACCTGCAAAACCTGCCAGCGAAAGA------------GAAT 31436 || || | | || ||||| || ||| | || | | ||| Sbjct 1629 TTGTCTTCCAACAACCCCAACCTACAGAACATCCCCGGATCTGCTGGTGCTCCGTTGAAA 1570 Query 31437 AAATA-CT--CCAAGCTGATCAAGTCTTGCTTCCAAGCTCCACCGGGTTGGATGTTCTGT 31493 ||| || |||||||||||||| ||||| |||| || || || ||| | |||||| Sbjct 1569 AAACGTCTTGCCAAGCTGATCAAGGAATGCTTTGAAGCACCTCCCGGATGGCTATTCTGT 1510 Query 31494 GGGCTGGACTTTGCAAGTCTGGAAGACAGGATCTCTGCCGTTACCACTAAAGACCCAAAT 31553 || || ||||| | || |||||||||||||| || |||| ||| | Sbjct 1509 GGTCTCGACTTCGACTCACTCGAAGACAGGATCTCAGC-------ACTATCGACACGCG- 1458 Query 31554 AAACTGAAGGTGTATACCGATGGTTATGACGGTCACTGTCTTCGTGCTTATGCTTACTTC 31613 | | ||| ||| |||||||| || || ||||| |||| || Sbjct 1457 -ACCNNNNNNNNNATA----------TGATGGTCACTGCCTACGAGCTTACTCTTATTTT 1409 Query 31614 GGTGAGCAGATGCCAGACATTGTGGATACT---GTAGAGTCTATCAACTCCATTGAGAAG 31670 || ||| ||| || || | |||| || || |||||||| |||| |||| Sbjct 1408 GGAGAGGTTATGGGTGATATCGACCCTACTTCAGTCGATAGCATCAACTCGATTGCGAAG 1349 Query 31671 AAGTACAAAGCTCTCCGTGGTGACAGTAAGGCACCAACATTCGCACTGACTTATCAGGGT 31730 || ||||| | | ||| ||| || ||||| ||||||||||| |||||||| Sbjct 1348 AAATACAAGCAGCAGAGACAAGACTCTAAAGCTCCAACCTTCGCACTGACATATCAGGGA 1289 Query 31731 ACTCATCAT-ACTCTGATGAAGAATTGTGGTTTCCCTAAAGAGAAAGCTGTACTGGTTGA 31789 ||| | ||| || |||||||| || ||||||||| || || ||| | |||| Sbjct 1288 ACTTA-CATGACCCTGATGAACAACTGTGGTTTCAGCAAGGAATTGGCTCAAGCAATTGA 1230 Query 31790 GAACCGTTTCAAGGAACTCTACAAGGTAAGTATCGACTGGGTTGATGCCAAGCTACAAGA 31849 |||| | |||| | | ||| ||| ||| ||||||| ||| | || || | Sbjct 1229 GAACGCATACAAGAAGATGTACGTGGTCTCGATCAACTGGGTGAATGACCGACTGGAACA 1170 Query 31850 AGCCAGTAAGGTTGGCTATGTCACTGTTGCATTCGGTCTGCGTGTCAGGACTCCACTGCT 31909 ||||| |||| |||||| ||||||| || |||||||| | || || || || || || Sbjct 1169 AGCCACCAAGGATGGCTACATCACTGTGGCCTTCGGTCTCAGAGTGAGAACACCTCTTCT 1110 Query 31910 CAAGCAAGTGATCCGTAAGACAAGTAAGACGCCGTATGAAGCAGAGGCAGAAGGGCGTAC 31969 |||||| | ||| || || |||| || || || || | ||||| || | || Sbjct 1109 GAAGCAAACGGTCCTCAACACGGGTAAAACCCCCAGAGAGGCCGCAGCAGAGGGTAGAAC 1050 Query 31970 AGCAGGTAATGCACTGGGTCAGAGTTGGTGTTTACTCAACTCCCGTGCAAGTGTCGAGTT 32029 ||||||||| ||| |||||||| | || | | ||| |||||| | || || Sbjct 1049 AGCAGGTAACGCAATGGGTCAGTCCTATTGCATGTTGAACAACCGTGCTGCTTCTGAATT 990 Query 32030 TATGGAGAAGGTTAGAGCCAGT-GAA-CACAGGCTTGATATCCGACCATGTGCTCACATC 32087 |||| |||||| || ||| ||| | | || || ||| |||||||||||||||| Sbjct 989 CATGGGTAAGGTTCGA--AAGTCGAAGTATCGACTGGACATCAAACCATGTGCTCACATC 932 Query 32088 CATGATGCCCAGTACATGATGGTGCGAGATGA------TATCGACGCCTTGCTCTATGCC 32141 || || || || ||| | || || || || ||| || | || | || Sbjct 931 CACGACGCTCAATACTACCTTGTCCGTGACGAGGGTTCTATGGAACCTCTGATGTACATG 872 Query 32142 AATGAGCATTTAGTGGAAGCTGTTAAATGGCAGGAGCATCCTGACATTGCCCACGATGAT 32201 ||||||||| || |||| ||| ||||||||| | || || ||| ||||||| | Sbjct 871 AATGAGCATCTACCCAAAGCCGTTGCATGGCAGGATGACCCAGAGATTTACCACGATCAG 812 Query 32202 GTGAAACTGGGTGGTGAGTTTGGTATCTTCTATCCAGACTGG 32243 |||||||| ||| | | | ||||||| ||| ||||| Sbjct 811 GTGAAACTCTCAGGTTCGGTCGAGATCTTCTGGCCAAACTGG 770 >seq266624 Length=731 Score = 161 bits (178), Expect = 5e-35 Identities = 363/540 (67%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 63948 TTCCAGTTGCTTCATCTGTT-CTGCCATTGGATCAGGCTGAGGTTTCCATGTGGCTAATT 64006 ||| ||||||| ||| | | ||| || |||||||| || |||| | | | |||| Sbjct 73 TTCAAGTTGCTGCATTTCCTGCTGGAAT-GGATCAGGTTGTGGTTGGTACGAA-CGAATT 130 Query 64007 TATG-AGCCAACTCAGGCATACGTTTTAATTCAGCAATCTCAGACAGAATCATCATGCTA 64065 | | |||||||||||||||||| || | |||||||||| | ||||| ||| | | Sbjct 131 TGTTCAGCCAACTCAGGCATACGCTTGAGGTCAGCAATCTTACCCAGAACGATCTGACGA 190 Query 64066 ATTGCCGGATCCATACCGGGGCCAATAGTTTGCAGCATGAAGCCCAGATCTTTAGCTTTC 64125 | |||||||||| | || |||| ||| || || | | || ||||| || |||||| Sbjct 191 AGCATCGGATCCATATCAGGACCAACAGTCTGAAGAACCATACCAAGATCATTGGCTTTC 250 Query 64126 TGGTCATCGACTTCAGCAGTGGCAATATCCACTTCCAAATCGAAATTACCCTTCAGATCT 64185 || ||||| ||| || |||| ||||| || | || || || ||||| || || Sbjct 251 TGTTCATCAACTGAGGCTGTGGAGATATCAACCTTCAGGTCAAAGTTACCAGCCAACTCA 310 Query 64186 TCACGATTTACGGTAATAAACGTGCTATTTGTGACTCGTACCACCTCTTTTTCAGAGAGG 64245 |||| | || |||| ||||| | || || || || | || | | Sbjct 311 GAACGAGAGATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCCAAG 370 Query 64246 AATACGGCATTCATAGCGATGATTTTATTCCCGATATCGGTCATACCTTTGGCTAAACGG 64305 || |||||||| |||||||| || | ||||| | |||||||||||| | ||| Sbjct 371 AACTGAGCATTCATTGCGATGATCTTCTCACCGATCTTCTGCATACCTTTGGCCAGACGA 430 Query 64306 CGTAAAATAGCCATTTCACGCTTACTTGCAGCGTCCAAAGTGCCACGAATACCAGCAGCT 64365 || | ||| ||| || || | || || ||||| || || || ||||||| || Sbjct 431 CGAACAATGCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGTTGCA 490 Query 64366 ACATCACCATAAGCGTTACCAGAGATACCACCAGCAAATGACTTAACACCCGTCAGTGCT 64425 || |||||| || | |||||| |||||||| | ||||| || || || || |||||| Sbjct 491 ACGGAACCATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAGTGCT 550 Query 64426 TCTGCTTCCTGATTCTGCAATGTGAGCATGGTGATAGCAGACTGAGGAATCTCAGGATAT 64485 |||||||| || ||||| | || | | || ||||| || |||||||||||| Sbjct 551 TCTGCTTCTTGGTTCTGGAGCTGGATCGTTTGCATCGCAGATGCTGGGATCTCAGGATAT 610 >seq121189 Length=2370 Score = 129 bits (142), Expect = 3e-25 Identities = 203/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 18665 TGGCCTCTGCTATGGAATTCTTCCATATGCCTGTGACTCTGGTCGGTGTTGTCCACGATA 18724 |||| || || || ||| ||| | ||||| || |||||| |||||||| ||||| | Sbjct 1746 TGGCTTCGGCCATTGAAGAGTTCAACATGCCAGTAGATCTGGTTGGTGTTGTTCACGACA 1805 Query 18725 AATCAACGTGGGCAAGACGTGGCCTGTCGGTGTTCAATACTGTAATTGAACCCGGCTGGC 18784 |||| || ||||| |||||||| ||| || ||||| || || || ||||| || ||| Sbjct 1806 AATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGAACCGGGTTGGA 1865 Query 18785 GAGGCTACCTGACACTTGAACTTGTCTACCACGGCTATGAAGGCATGGTTATCCCTGCTG 18844 ||| | | ||| | || ||||| || ||||| || || || |||||| | | Sbjct 1866 AAGGTCATTTAACATTAGAGCTTGTTTATCACGGTAGCGAGGGTATACATATCCCATCAG 1925 Query 18845 GATCTGGTATTGCTCAAGTGCTGTTTCATGAAAT-AGCAAACCCTGCTGCTTACACCGGT 18903 ||| ||| |||||||||||||| ||||| ||| | | | || | || || || Sbjct 1926 GATGTGGAATTGCTCAAGTGCTATTTCACGAAGTCATCGAAAGC-GCACAATATGATGGA 1984 Query 18904 AAGTATCAGAACCAAGAAAATGAGCCAGTCCCGGCTCGCAACTCGTAA 18951 || || || || |||||| ||||||| |||| || |||| ||| ||| Sbjct 1985 AAATACCAAAATCAAGAAGATGAGCCGATCCCAGCACGCAGCTCTTAA 2032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240842643763304