Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq287714 109 3e-19 seq14098 98.7 5e-16 seq159884 87.8 9e-13 >seq287714 Length=1605 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 37922 GCATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGT 37981 || ||||| ||||||||||| |||| ||||| | ||| | | ||||||| | ||| Sbjct 1125 GCCTTGCCGCCTTGTCATACGATGTTTCAGTTTTATGTGGCGGATGGAAAGTTGTCTTGT 1184 Query 37982 CAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTAT 38041 || | || |||||| ||| ||| ||||||||||||| || ||||||||||| ||| Sbjct 1185 CAACTTTACCAACGTTCTGCGGATATCTTCTTAGGTGTGCCGTTTAATATTGCCTCTTAT 1244 Query 38042 GCGTTGCTTACACAT-ATCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTCTG 38100 ||| | ||||| ||| || |||| || |||| |||||||| || || ||||| Sbjct 1245 GCGCTTCTTAC-CATGATGTTAGCGCAAGTTTGTGATTTAGAAGTAGGCGATTTTGTTCA 1303 Query 38101 GACTGGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGCTAAA 38149 || ||| | | ||| | || ||||||| |||| ||||| ||| Sbjct 1304 TACGTTTGGCGATGCTCATATTTATCATAATCACTTTGAACAAGCCAAA 1352 >seq14098 Length=52687 Score = 98.7 bits (108), Expect = 5e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 37931 CCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTAAGCTGTCAGTTATAT 37990 || |||||| | |||||||| || | ||||| |||||| || | |||||| | || Sbjct 22164 CCCTGTCATGCCTTGTTCCAATTTTATGTAGCAAATGGACAATTGTCTTGTCAGCTTTAC 22223 Query 37991 CAACG-TAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTATGCGTTGCT 38049 ||| | | || |||| | || ||||| | || ||||||||||| |||||||| || | Sbjct 22224 CAAAGATCCTG-TGATGTGTTTTTAGGACTGCCTTTTAATATTGCTAGCTATGCTCTGAT 22282 Query 38050 TACACATATCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTTGTCTGGACTGGTGG 38109 ||| | || || || || |||||| ||| | | | |||||||| ||||| || || Sbjct 22283 GACAGAAATGGTGGCAAAAGTATGTGGTTTAAAGGCTAAAGAATTTGTTTGGACGGGAGG 22342 Query 38110 TGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGCTAAAAAACAATT 38157 | ||||| |||| || || | ||||||||||| |||||| Sbjct 22343 GGATGTTCATTTGTATTCAAACCATTTAGAGCAAGCTAAGTTACAATT 22390 >seq159884 Length=3827 Score = 87.8 bits (96), Expect = 9e-13 Identities = 107/144 (74%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 37924 ATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGT-AGAGA--ATGGAAAACTAAGCTG 37980 ||| |||||||| || || || || || || | || || || || ||||| || || Sbjct 1921 ATTACCACCTTGCCACACGTTATTTCAATTTTACGTCAGCGATGATAACAAACTCAGTTG 1980 Query 37981 TCAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCAAGCTA 38040 || |||| ||||||||||| ||||| || | ||||| || ||||||||||| || || Sbjct 1981 CCAAGTATACCAACGTAGTGCCGATTTATTTCTGGGTGTACCTTTTAATATTGCCAGTTA 2040 Query 38041 TGCGTTGCTTACACATATCGTAGC 38064 |||||||| |||| || ||||| Sbjct 2041 CGCGTTGCTAACACTAATGGTAGC 2064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247934410365928