Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023589.1 Length=71629 Score E Sequences producing significant alignments: (Bits) Value seq121188 273 1e-68 seq76541 156 2e-33 seq266624 113 2e-20 seq121189 95.1 6e-15 >seq121188 Length=15723 Score = 273 bits (302), Expect = 1e-68 Identities = 849/1283 (66%), Gaps = 54/1283 (4%) Strand=Plus/Plus Query 19518 CAGCATGGAGATAGTATCAATACAGTCATCCTTACCTTTAATTCCATTAATGGTAGCTAG 19577 || ||| ||||| ||||| | ||||||||||||||||| | |||| ||||||| | Sbjct 273 CAACATAGAGATGGTATCGAGGCAGTCATCCTTACCTTTCAAACCATCTTTGGTAGCCAA 332 Query 19578 TTTAATCTGGCCCATGAACAGACCCATAATAGTTGAGTCTCT--CAACTCTTCCGGGAAG 19635 ||||| ||||||||| |||| || |||||| ||| || ||| ||||| Sbjct 333 AGAGATCTGTTCCATGAACAAGCCCAGAAC--TTGAGTATCTTTCATCTCCAAGGGGAAC 390 Query 19636 TACATCTTACCAGCTTTGAACCATGGAACTACCAGGTTAAAGCGTGACAGCTTAGAAGTT 19695 | ||||| ||||| || || ||||| ||||| ||||| | ||| ||| || Sbjct 391 TTGATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTATCTGTC 450 Query 19696 ACAGGACGGATGCCTGGCTTACCACCTTCAGAGGATGCAAAGTTAAAGAAGACATTACGG 19755 | || ||||| || || ||||| |||| | | |||| ||| ||| | | | | ||| Sbjct 451 ATGGGTCGGATACCCGGTTTACC--CTTCTGCTGG-GCAAGGTTGAAGTAAATACTCCGG 507 Query 19756 TTAATCATTTCTTTC-TGAAGGAGTGAAATGAATCCATTTTGCTGTCCTGTGATTTCGAC 19814 | | |||||| | ||| | || | | || ||| ||||| || || || || || Sbjct 508 TAATCCATTTCACGCATGATCCATTGGA-TAAACCCACCCTGCTGACCAGTAATCTCAAC 566 Query 19815 CCCAACGTTTTGTGGTTGGTATTCTTGAACCAGACGGAACAGGTCATCAAAGTTTTTATC 19874 || ||| | ||||| | ||| || | ||||| ||| |||| || || | |||| Sbjct 567 ACCGACGCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGATTGAGGTATC 626 Query 19875 CATAAGCTGACGATTAGCCACACCATCAATCCAGAACCAATCTCCATTAGAACTATAAGC 19934 ||| ||| ||| | ||||| |||| |||| |||||| ||||| || ||| || Sbjct 627 CATTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGC 686 Query 19935 CCAAACTGATATGACACTGTAGTCACTGGTCTGTTTCTCCGAAGTAGCAAAGTCGGTTGT 19994 ||| |||||| || || || || |||||| ||| || |||||||| || || Sbjct 687 CCATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGT 746 Query 19995 GATGTAATAGTTGTAGCAGGACTTCATCCTTAACA--GTTGCTGTCTGCTAT---ACCAT 20049 |||||| | || || |||| | || || | || ||| | | | |||| Sbjct 747 GATGTAGAACTTATAATC---CTTCTTG-TTCGCAAGGATG-TGTTTCCGTTGGAACCAA 801 Query 20050 CTAATTTCACTATCCTGAACCAGTCT---CTCATCTTCGGAGCT-AATACGGAGCATAAG 20105 | || |||| |||||||||| | |||||| || || ||| || |||||||| Sbjct 802 CCGATGTCACCTTCCTGAACCAAACGAGACTCATCATC----CTGAATCCGAAGCATAAG 857 Query 20106 TTCCTGATAGAA-GCCTGCCAGCTTACCAGTCTTAACTGCCATA-TCGTATTGAGCTTTG 20163 |||||| ||| | || | || ||||| | || || | ||||| | |||| Sbjct 858 CTCCTGACGGAACGACT-CAAGTTTACCT-TGTTGCTTGAAGAAGTCGTAATCCTCTTTC 915 Query 20164 ATGTAATCGTAAGAGAATCGGTCATCCCATGCACCCTGAAATTCTTCCCTACTACAAGGA 20223 | | ||||| | || || || |||||| || || || | | || | |||| Sbjct 916 AACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACAGGA 975 Query 20224 AACTTCTCACACACAGGCCACACGTTTACATCCCATGCACCAGACTCAACTGCTTCAATG 20283 |||| || |||||| ||||| ||||| || ||||||||||||||||| | ||||| | Sbjct 976 AACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTTGATAC 1035 Query 20284 ATAATGTCTTCCTTATTAAAGGGAGTACCATTGAAAATTACTTTACGACGGGT-CGGGTC 20342 | ||||| | ||| | |||||||| ||||| | || || | | ||| | |||| Sbjct 1036 ACGATGTCGTTCTTGTCGAAGGGAGTCCCATTCAGAA-TAGTCTTTGACTTTTGTGGGTG 1094 Query 20343 AAGAGCATGGTTCACACCTTTATAAACAGTATCTTTAATAGCTT--CCATGCTAGTCTTG 20400 |||||| |||| | ||| || ||||||||||| ||||| ||| |||| || ||| Sbjct 1095 AAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCATCGCAG--TTG 1150 Query 20401 GAG--TTAGCATCCCCGTCACTAATCAAGTCATCCAGTACACAGAGTGTTGGACGCTTAC 20458 ||| || ||||| | || ||||||||||| || || || | || || |||| Sbjct 1151 GAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCGAAGGTCGTTTAC 1210 Query 20459 CATATATCTTCGTACCACGAAGACCTGTCTTAGCACCAAATAGCTTAACACCAAGTCGAT 20518 || | |||||||||||||| | ||| | ||| ||||| || | ||||||| || Sbjct 1211 CAAAGATCTTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACACCAAACTTAT 1270 Query 20519 GCCCCTCTACATTACGAAACTCCA-ATAG------GTTATCCGTAAAGGTAGCTTCGGGT 20571 || |||| || ||||||| ||| || ||||| || |||||| || Sbjct 1271 -TCCNNCTACGTT---GAACTCCATGTAGTTCTCTGTGATCCG-AACCCCAGCTTCTGGC 1325 Query 20572 ATCCATTGCTGAAGGAACTCACTATTCTTGTAACGAAACTCAATGTTCTTACGTGCAGAC 20631 ||||| ||||| || ||||| | | |||||| | || || ||| || ||| Sbjct 1326 ATCCAGTGCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAGCGGAC 1385 Query 20632 TTAGCACCGTTATCCATTGAGTCAGATACGTAAATCATTCCTTCTACCTTACCCAGCTTG 20691 || |||| || ||||| ||||| || | || | ||| | || || || || | | Sbjct 1386 TTCACACCATTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTCCCAAAACCG 1445 Query 20692 GTAAG-TGCCCAAACACTGCCAGGAACAAAGTAAAGTATTCCATGAACACAGCAGTCTTA 20750 | ||| || |||| ||||| |||| || | |||||| | ||||| || || || Sbjct 1446 GGAAGATGATTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTGGTTTTC 1505 Query 20751 CCTGCACCACGGAAACACAGATT 20773 | | |||||||||||||||||| Sbjct 1506 GCAGAACCACGGAAACACAGATT 1528 >seq76541 Length=11138 Score = 156 bits (172), Expect = 2e-33 Identities = 191/260 (73%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 49463 TTCATTAAGTACACCCAACGTCAGATG---TATCACAACATTAGCTATGACGTGTATGTG 49519 ||| || || || |||||||| |||| ||||||||||| |||||||||| |||||| Sbjct 740 TTCTTTGAGAACTTCCAACGTCGGATGATCTATCACAACATCTGCTATGACGTTTATGTG 681 Query 49520 CTTATCTATCAGTTATTCATGGATAACCTGATTGATACAGAAGGCTTACTGCATGGCATG 49579 || || |||||||| || |||||| || | |||| ||| || | || | || || Sbjct 680 CTGATTTATCAGTTGTTTATGGATCACATCCTTGACCAAGAGGGAATGCTCGAAGGTCTG 621 Query 49580 GAAATCATGCTACGTAACTGGGATTGCACTAAGTTAATCACCTACCTGGCTACTAACAGT 49639 ||| || | ||||| |||||||| || || || | ||||| || ||||| || || Sbjct 620 GAAGTCCTCCTACGCAACTGGGAATGTACACAGCTCATCACGTATCTGGCCACCAATTCA 561 Query 49640 TGTGCTGGTAACCACCTTAGTCTGAAAGACCAGGCTCAGGAGTATGCTGGTAACTATGCT 49699 |||||||||||| | | ||||||| | ||||||||||||| || || ||||||||| Sbjct 560 TGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCT 501 Query 49700 CAGGATGACATTAAAGACAT 49719 || ||||| | ||||| Sbjct 500 GTTGAAGACATCCATGACAT 481 >seq266624 Length=731 Score = 113 bits (124), Expect = 2e-20 Identities = 313/475 (66%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 9382 GGGTCTGGCTGTGGTTTCCAGGTACGTAATTCATGAGCAAGGTCTGGCATACGTTTAAGT 9441 || || || ||||||| | | ||| | || | ||| | || |||||||| || || Sbjct 101 GGATCAGGTTGTGGTTGGTACGAACGAATTTGTTCAGCCAACTCAGGCATACGCTTGAGG 160 Query 9442 TCTGCAATCTTAGCTACAA-GAGATAACGTAATAGTCTGATCAACTGTATTACCTAACGT 9500 || ||||||||| | | || || | ||| | | || |||| | | ||| | || Sbjct 161 TCAGCAATCTTACCCAGAACGATCTGACGAAGCA-TCGGATCCATATCAGGACCAACAGT 219 Query 9501 TTGAACCATGAAGCTCAGGTCCTGAGATTTCTGGTTATCAATTTCAGCAGTATTAATATC 9560 |||| | | | || || | | |||||| | ||||| | || || ||||| Sbjct 220 CTGAAGAACCATACCAAGATCATTGGCTTTCTGTTCATCAACTGAGGCTGTGGAGATATC 279 Query 9561 AACCTCAATATCGAAGTTACCTTTAAGGTCTTCACGGTTAATTTCTACATACTGCTCATT 9620 ||||| | || |||||||| | || ||| ||||| ||| ||| || || Sbjct 280 AACCTTCAGGTCAAAGTTACCAGCCAACTCAGAACGAGAGATTTCAACAAACTCTTCGTT 339 Query 9621 AGTAATACGTACTACTTCTTTCTCAGATAAGAACACAGCATTCATTGCACAAATCTTAGT 9680 || ||| || ||||| | ||| |||||| |||||||||||| ||||| Sbjct 340 TGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCATTCATTGCGATGATCTTCTC 399 Query 9681 ACCAAT-GTCTGCCATACCCTTAGCTAATCGACGAAGGATTGCCATCTCACGTTTGGATG 9739 ||| || |||| |||||| || || | ||||||| || |||||| || |||| Sbjct 400 ACCGATCTTCTG-CATACCTTTGGCCAGACGACGAACAATGCTCATCTCCCGGACAGATG 458 Query 9740 CTGCATCGAGTGCACCACGAATACCAGCAGCCACATCTCCGTAAGCTGCACCAGTTACAC 9799 | || || ||||| || ||||||| || || || || || |||||| | || Sbjct 459 TAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACCATACGCATCACCAGAAATAC 518 Query 9800 CACCAGAGAATGCTTTAACACCGGTTAGTGCTTCAGCTTCCTGGTTCTGCATCTG 9854 |||| ||||||| ||| || ||||| |||||||| ||||| |||||||| | ||| Sbjct 519 CACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTCTTGGTTCTGGAGCTG 573 >seq121189 Length=2370 Score = 95.1 bits (104), Expect = 6e-15 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 37062 TGGCTTCAGCAATTGAGAAGTTCAACATGTCCCCA-TCCTGTGTAGCTATCGTTCATGAC 37120 ||||||| || ||||| ||||||||||| | | ||| || | | | ||||| ||| Sbjct 1746 TGGCTTCGGCCATTGAAGAGTTCAACATGCCAGTAGATCTG-GTTGGTGTTGTTCACGAC 1804 Query 37121 AAGTCTACATGGGCAAGACGTGCATTATCTGTGTTCAATACCGTAATAGAACCAGGATGG 37180 || || || ||||| ||||||| | ||| ||||| || || || ||||| || ||| Sbjct 1805 AAATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGAACCGGGTTGG 1864 Query 37181 AAAGGGTATTTGACTCTTGAACTGGTCTATCATGGTCGTAAGAAATTACATATCCCGGCT 37240 ||||| |||| || | || || || ||||| ||| | || |||||||||| | Sbjct 1865 AAAGGTCATTTAACATTAGAGCTTGTTTATCACGGTAGCGAGGGTATACATATCCCATCA 1924 Query 37241 GGTGCTGGGATAGCTCAAGTATTATTTCA 37269 || ||| || |||||||| ||||||| Sbjct 1925 GGATGTGGAATTGCTCAAGTGCTATTTCA 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228282181241840