Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq287714 82.4 2e-11 >seq287714 Length=1605 Score = 82.4 bits (90), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 35712 ATGGCGCTGCCGCCTTGTCATTTTGCCTTTCAATTCAACGTCACCGATGGAAAATTAAAT 35771 ||||| |||||||||||||| ||||| || | || | |||||||| || | Sbjct 1122 ATGGCCTTGCCGCCTTGTCATACGATGTTTCAGTTTTATGTGGCGGATGGAAAGTTGTCT 1181 Query 35772 TGTATGGTTTACCAACG--CAGCGGAGATATGTTTTTAGGGGTACCGTTTAACATCGCCG 35829 ||| |||||||||| | ||| ||||| || ||||| || |||||||| || ||| Sbjct 1182 TGTCAACTTTACCAACGTTCTGCG--GATATCTTCTTAGGTGTGCCGTTTAATATTGCCT 1239 Query 35830 GTTATGCAGCTATAACCATGATGATTGCCCAATTAACCAATTTAGAGCCGGGCGAGCTTG 35889 |||||| | | ||||||||| | || ||| | ||||||| ||||| ||| Sbjct 1240 CTTATGCGCTTCTTACCATGATGTTAGCGCAAGTTTGTGATTTAGAAGTAGGCGATTTTG 1299 Query 35890 TCCATGCTATCGCAGACGCGCACATTTATTTAAATCACATCGAGCAAG 35937 | ||| | | | || || || |||||| |||||| | || |||| Sbjct 1300 TTCATACGTTTGGCGATGCTCATATTTATCATAATCACTTTGAACAAG 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124499832391680