Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq209393 320 1e-81 seq209394 132 4e-25 seq281672 109 4e-18 seq46544 91.5 1e-12 seq56367 86.0 5e-11 >seq209393 Length=1576 Score = 320 bits (354), Expect = 1e-81 Identities = 692/1029 (67%), Gaps = 11/1029 (1%) Strand=Plus/Minus Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 || || || || |||| ||||||||||| | ||| | |||||| | ||||||||| Sbjct 1548 ACTTTGGGGATTCGAGTAGATCCTCCAACGAGTACTAGTTCATGAATGGCGGATTTATCC 1489 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | ||| | |||| ||| | || || ||||| |||||| | |||| || || ||| Sbjct 1488 ATTTTAGCATCCCTCAAAGCCTTCTCCACGGGCTCAAGAGTTCCCTTAAATAAATCCGAA 1429 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 282037 || || ||||| ||| |||| || || | | || | | ||| | || || || ||| Sbjct 1428 CATAGCTCTTCAAATCTAGCCCTCGTGATACTGGTGTAGAAGTCAGTGCCCTCAAATAAA 1369 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 || |||| ||| || | | ||| | |||| || || | || || || || |||||| Sbjct 1368 GAGTCAATTTCGATACTCGCTTGGGCGGAAGCTGAGAGCGTTCGCTTGGCTCGCTCACAT 1309 Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT-TATATTTT-C 282155 || || | |||||||||||| ||| | || ||| | |||| | ||| ||||| | Sbjct 1308 GCAGTTCGTAGTCTTCGTAAAGCTCTCGC--ATTCTTAGAAATGTCTTTGCCCATTTTCC 1251 Query 282156 TCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 | |||| || | ||| ||| | ||||| | || ||||| ||||||||||| | Sbjct 1250 TTCTGAATTC--GGATACAAAATGGTCCACAAGTCTGTTGTCAAAGTCTTCACCTCCAAG 1193 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | || | || | || | | | || | |||| || ||||||| ||||||| | Sbjct 1192 GTGTGTGTCCCCAGCAGTGGATTTAACCTCAAAAACGCCGTCTTCAATTGACAAAACGGA 1133 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT---GTCTTG 282330 ||||| || || || || | |||||||| || || || ||||| | | || Sbjct 1132 CACATCGAATGTCCCTCCTCCAAGGTCAAAAATGAGAACGTTGCTTTCTCTGGAGCATTT 1073 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || || || || ||||| || | || || ||||| || ||||| || || | | || Sbjct 1072 TTTCTTGTCGAGCCCATAGGCTATTGCGGCCGCAGTGGGCTCATTGATGATGCGAAGTAC 1013 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||||| || || || ||| || || || || || || | || || |||||||| || Sbjct 1012 GTTAAGCCCTGCTATGTGTCCAGCGTCCTTCGTTGCCTGCCGCTGAGAGTCGTTAAAGTA 953 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTG 282510 || |||||||| | |||||||||| | || || |||| | || | ||| ||| Sbjct 952 GGCGGGAACAGTGACAACGGCATCTCTGACCTCGGTTCCGAGGTATTCCTGAGCTATTTC 893 Query 282511 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATT 282570 ||||||||||| | | ||| | || |||| |||||| | | || ||| | ||| Sbjct 892 CTTCATTTTACTCAGTACCATGGCAGAGATTTCTTCTGGCGTAAATGACTTTGTCTCACA 833 Query 282571 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATA 282630 || || || | | ||| || ||||| || ||||| |||||||||| Sbjct 832 TTTGTACTCGACATTGATTCTTGGCTTGCCCCCAACGTTCTCAACTTAGAATGGCCAATG 773 Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 || | || | ||| ||| ||| | || | ||| ||||| | || ||| ||||| Sbjct 772 CTTTTTGTCCTGTGAAACGGTTTCGTCGTAGAATTGTCTGCCAATCAGTCTTTTGGCATC 713 Query 282691 AAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 282750 ||| | ||||| ||||||| | ||| |||||| |||||||||||||| || || Sbjct 712 AAAGACGGTATTACTTGGATTCAGAGCAACTTGATTCTTGGCTGCATCTCCTATAAGTCT 653 Query 282751 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 | | || |||||||| | ||||| || || || || ||||| |||||||| || ||||| Sbjct 652 TGCAGTGTCTGTAAAAGCGACATAAGACGGCGTCGTTCGATTCCCTTGATCGTTGGCAAT 593 Query 282811 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 282870 ||||| ||||| |||| || |||| || ||||| |||| ||||||||||| || Sbjct 592 GATTTCCACTTTTCCATGCTGAAATACTCCCACACAGGAGTAAGTCGTTCCTAAATCGAT 533 Query 282871 ACCAATAGC 282879 || ||||| Sbjct 532 CCCGATAGC 524 >seq209394 Length=1434 Score = 132 bits (146), Expect = 4e-25 Identities = 287/427 (67%), Gaps = 2/427 (0%) Strand=Plus/Minus Query 281295 CTTTTTTCTTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTT 281354 |||||| ||| | || || | | | ||| | ||| ||| | |||| |||| |||| Sbjct 497 CTTTTTGCTTTTCGTCCTCTGCCTTATATTTATCAGCATCTTGGACCATTTTCTCTATTT 438 Query 281355 GATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTG 281414 || | |||| | ||| || ||| ||||| || || || | ||| || || Sbjct 437 CCTCCTTTGAGAGGCGTCCTTTATCATTGGTAATCGTGATTTTTTCTTCTTTACCTGATG 378 Query 281415 ATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAA 281474 | || || || ||| | ||||| ||||| || |||||||| | || || || ||||| | Sbjct 377 ACTTGTCTGCTGCACTGACATTTAGAATCCCGTTGGCATCAATGTCGAAAGTCACTTCGA 318 Query 281475 TTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTAT 281534 | ||||| || ||||| | || || ||||| || | || || |||| | || | || Sbjct 317 TCTGAGGCACTCCTCTAGGTGCCGGAGGGATTCCATTCAGATCAAATCTCCCTAAGCAAT 258 Query 281535 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 281594 ||||||||| || | || || || ||||| | || || || ||| ||| ||||| Sbjct 257 GATTATCTTTGGTCATGGGTCTCTCCCCTTCGAAGACCTGAATGGTCACTGCAGGTTGAT 198 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCA 281653 ||||||| ||||| || || ||| || | | ||| || || ||||||||||| | Sbjct 197 TATCTGAGTAAGTGGTGAAGACT-TGCTTCTGTTTTGTTGGGATCGTTGTGTTTCTCTTG 139 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 || | ||||| | || || || ||||| | || |||||||| |||| ||||| Sbjct 138 ATGAGTGAAGTCATGACGCCTCCTGCCGTTTCAATTCCGAGAGAAAGCGGAGCTACATCC 79 Query 281714 ACTAGGA 281720 | || || Sbjct 78 AGTAAGA 72 >seq281672 Length=1211 Score = 109 bits (120), Expect = 4e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131163 ATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATG 131222 |||||||| ||||| | || || || | |||||||||||||||||| ||||||| |||| Sbjct 644 ATAAAATACAAATTATGGTTGCTACTGTGGCATTTGGTATGGGTATTGATAAACCTGATG 585 Query 131223 TTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTG 131282 | || ||||| |||| | || || ||| | |||| ||||||||||||| || Sbjct 584 TGCGATTTGTTGCGCATTTTGATTTACCTAAAAATCTAGAAGCGTATTATCAAGAAACTG 525 Query 131283 GTAGAGCAGGTCGTGATGGAGAA 131305 || |||| |||||||||||| || Sbjct 524 GTCGAGCGGGTCGTGATGGACAA 502 >seq46544 Length=778 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || || | |||||| ||||| ||||| || || | | | ||||||||||| | Sbjct 556 CCGTAGGCCAGAGCAGCTGCAGTGGGTTCGTTGATGACACGAAGGACATTAAGACCCGAG 497 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| ||| ||||| || ||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 496 ATTTGTCCGGCATCCTTGGTGGCCTGTCTCTGTGAATCGTTGAAGTATGCGGGAACGGTG 437 Query 282464 ATAACGGC 282471 | |||||| Sbjct 436 ACAACGGC 429 >seq56367 Length=19918 Score = 86.0 bits (94), Expect = 5e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 637112 CAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGAC 637171 || |||| || | || || ||||| ||||| || | || ||||| ||||| | || | Sbjct 13951 CACAGAACATAGTGGTGGACTATTCATCTCCTAACGTAGCCAAAGAGATGCACGTCGGGC 14010 Query 637172 ATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACG 637231 ||||||| ||||| || |||||||| || | | || |||| ||| || ||| ||| Sbjct 14011 ATTTAAGGTCAACCATCATTGGTGATGCTTGTGTTCGGCTATTGGAATGGTTTGGTCACA 14070 Query 637232 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAAT 637286 |||| | | |||||| | ||||||||||| || | ||| || ||| |||| Sbjct 14071 ATGTGATTAGACGAAATCATATCGGTGATTGGGGCACACCATTTGGCATGCTAAT 14125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3726460574091216