Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq288571 86.0 6e-12 seq275813 84.2 2e-11 >seq288571 Length=667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 281/427 (66%), Gaps = 16/427 (4%) Strand=Plus/Minus Query 27010 TCACAAATCATATAGATTACATCAATATTAGTTCTAGGGTTTCTGCTCCCAATATTATAT 27069 ||||||||||| | || || || || || || | ||| | || |||||||| Sbjct 525 TCACAAATCATTTCAATCACTTCTATCTTTTTTTTCTCGTTGTGACCACCGATATTATAA 466 Query 27070 GTCTCTCCAGATTTGCCTTTAGTTACTACTAGGT--GTAATGC-CTCT-GCGTGATCGTC 27125 | |||||| || ||||| || | | || | |||| || |||| || ||||| || Sbjct 465 GCCTCTCCTATTTCCCCTTTTGT--CGA--AGTTAAGTAAAGCGCTCTCGCATGATCCTC 410 Query 27126 AACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATTGGTTTATGCAT 27185 || | ||||| ||||| ||| | ||||||||||||| || ||| ||| | | | Sbjct 409 TACAAACAACCAATCTCTAACTAGCTCTCCATTACCATAAATGGGTATTTTTTT-TCCTT 351 Query 27186 TAAGAT-ATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATATGCTCCAAAAT 27244 || | |||| ||| ||| || |||| |||||| ||| |||||| | ||| ||| Sbjct 350 CAATAGCATTTAGTATTGTTAAGGGAATTAATTTTTCCGGAAAATGATAAGGTCCGTAAT 291 Query 27245 TATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCACGCTCTTACCA 27304 ||||||||||||| | || || || | ||||| || |||||| || || | Sbjct 290 TATTTGAACAATTACTAATCACCACTGGCAACCCATATGTTTTCCCCCACGCCCTAACAA 231 Query 27305 AATGATC---GCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAAGGATTCT 27361 |||||| ||| ||||| ||||| ||| ||| || || || || | Sbjct 230 GATGATCTGAACTT---GCTTTGCTTGCAGAATAAGGAGAGCTGGGAGCGTATGGCGTAG 174 Query 27362 GTTCTGTAAACGGATAATCTCCTTCTTCCAGATCACCATACACTTCATCTGTTGAAATAT 27421 ||||||||| | || | | ||| || |||||| | || ||||| || |||| || Sbjct 173 TTTCTGTAAATAACTTATTTGTATTTTCTAGGTCACCAAAAACCTCATCCGTAGAAACAT 114 Query 27422 GATGGAA 27428 |||| || Sbjct 113 GATGAAA 107 >seq275813 Length=1014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 26581 AGAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAG 26640 ||||||||| |||| ||| | ||| | ||| || | |||||||||||| | | Sbjct 857 AGAACCATCTCCTAAAAGGCGTTGAAATTGTTCTTGGTCATGTGGTGTTGTAATGACTGC 916 Query 26641 TATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATC 26700 ||||| |||| || | |||||| || |||| || ||||| |||||||| || ||||| Sbjct 917 AATTTCTTTAATACCCGCAAGCATAAGCACAGTTAGAGGATAGTAAATCATTGGCTTATC 976 Query 26701 GTAAATTGGTAATAGTTGTTTACTAACCCCT 26731 || || || || || |||||| ||| ||| Sbjct 977 ATAGATAGGCAAAAGCTGTTTAGAAACGCCT 1007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473715189745920