Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq144875 105 2e-17 >seq144875 Length=1293 Score = 105 bits (116), Expect = 2e-17 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816 |||||||||| | | | ||||||| || |||| ||||||||| | |||| ||||| Sbjct 1035 AAAATCTAATATCATGCTGATTGGCCCAACAGGTTGTGGTAAAACACTTCTTGCCCAAAC 1094 Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876 |||||| | | || ||||||| | | || | |||||||| | || || ||||| Sbjct 1095 ATTGGCACGTGTTTTGGATGTACCGTTTACGATGGCAGATGCAACAACATTGACTGAAGC 1154 Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAA----TCCAAGCAGCTG 188932 |||||||| ||||| || || |||||| ||| || | || | ||||| ||| Sbjct 1155 CGGTTATGTTGGTGAGGACGTTGAAAAC--ATT--ATCTTAAAACTTCTTCAAGCGTCTG 1210 Query 188933 ATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTG 188992 | ||| || | ||| || ||||||| || || ||||| || ||||| ||||| || Sbjct 1211 AATACAATGTAGAACGTGCACAACGTGGTATCGTGTATATTGACGAAGTTGATAAGATCA 1270 Query 188993 CTAGAAAATCAGAAAGCACATC 189014 | | ||||| || | | |||| Sbjct 1271 CACGTAAATCTGACAACCCATC 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1586023686471168