Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024140.1 Length=72028 Score E Sequences producing significant alignments: (Bits) Value seq121188 125 3e-24 >seq121188 Length=15723 Score = 125 bits (138), Expect = 3e-24 Identities = 350/531 (66%), Gaps = 6/531 (1%) Strand=Plus/Plus Query 67896 TTCGCAGAGGTAGCGAAGTCAGTGGTGATGTAGAAGTTGTACCGCTTCTTGTTGTCCAGT 67955 |||| || || || |||||||||||||||||||| || || ||||||||| | || Sbjct 721 TTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGG 780 Query 67956 ACGTTGCGCCGCATGTACCAAGCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGAC 68015 | || ||| | ||||| | | ||||| ||||| | | ||| || || | Sbjct 781 ATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCATCC 840 Query 68016 ATGATCTGGAGCATAAGCTCTTGGTTGAATGTCTCGATCTTCCCTGCCTTCTTGGCCAGG 68075 ||| | ||||||||||| || ||| | ||| | || ||| | |||| | | Sbjct 841 TGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGCTTGAAGAAG 900 Query 68076 GTGTACTTCTGCAACACGAAGTCGTAGGTGAATCGGTCAGCCCATGCACCCTTGAACT-C 68134 ||| | || || ||||||||| || || || | |||||| | ||| | | Sbjct 901 TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCC 960 Query 68135 TTCCCGTGAGCACGGGAATCT-CTCGCACACAGGGTAGACGTTGACCTTCCAGGCACCAG 68193 ||| | | || |||| || || ||||| || | ||||| |||| ||| ||||||| Sbjct 961 TTCTTATCA--ACAGGAAACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAG 1018 Query 68194 ACTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTGTACCCGACCAG-ATGATC 68252 |||| | ||||| |||| || ||| || ||| || || ||| ||| || || Sbjct 1019 ACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGT-CCCATTCAGAATAGTC 1077 Query 68253 ATGTTCTTCTTCGGGTGCAGTGCGTAGTCCACTGCCTTGTACACCGTGTCTTCGATGGCT 68312 | ||| | ||||| || |||| || | ||||||| || || || | || Sbjct 1078 TTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAATCTTC 1137 Query 68313 GCGATGACGGTTGGTGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTACCGCAAGC 68372 || || | ||||| || |||||||| || || | ||||||||| || || |||||| Sbjct 1138 GCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGC 1197 Query 68373 TGCGGACGCTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACCG 68423 || || ||||| | ||||| |||||||| ||||| |||||||||| Sbjct 1198 GAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229554490088264