Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024142.2 Length=72583 Score E Sequences producing significant alignments: (Bits) Value seq121188 302 2e-77 seq76541 147 1e-30 seq266624 105 3e-18 seq121189 95.1 6e-15 >seq121188 Length=15723 Score = 302 bits (334), Expect = 2e-77 Identities = 851/1279 (67%), Gaps = 45/1279 (4%) Strand=Plus/Minus Query 3629 AACCTGTGCTTCCGTGGTGCAGGTAAGACTGCTGTGTTTATGGAATACTTTACTTTGTTC 3688 || ||||| ||||||||| | | || || || |||| | |||||| | || |||| Sbjct 1528 AATCTGTGTTTCCGTGGTTCTGCGAAAACCACTTTGTTCTTTGAATACATGACGTTGTAT 1469 Query 3689 CTGGCAGTGTTTGGTCACTTACCAAGTCTGGGTAAAGTAGAGGGAATGATTTACGTATCT 3748 ||||| |||| ||| | || || | || ||||| | | ||| | || | || Sbjct 1468 CTGGCGATGTTCAATCATCTTCCCGGTTTTGGGAAAGTCCAAAGCATGTTGTATATTTCG 1409 Query 3749 GACTCAATGGATAACGGTGCTAAGTCTGCACGTAAGAACATTGAGTTTCGTTATAAGAAT 3808 ||||| ||||| || |||| ||||| || ||| || || | ||||||| | | Sbjct 1408 GACTCCATGGACAATGGTGTGAAGTCCGCTCGTGAGTCGATCCGATCTCGTTATGACTCT 1349 Query 3809 AGTGAGTTCCTACAGCAATGGATACCTGAAGCTACTTTTACGGATAAC------CTAC-T 3861 ||||| || ||||| ||||| || |||||| || ||||| || |||| | Sbjct 1348 TCGGAGTTTCTCCAGCACTGGATGCCAGAAGCTGGGGTT-CGGATCACAGAGAACTACAT 1290 Query 3862 GGAGTTCCGTAATGTAGAAGGGCATCGTCTTGGTGTTAAGCTGTTTGGTGCTAAGACAGG 3921 ||||||| || |||| || || ||||||| |||| ||||| ||| | || Sbjct 1289 GGAGTTC---AACGTAGNNGGAATAAGT-TTGGTGTCCGTATGTTCGGTGCCAAGTCTGG 1234 Query 3922 TCTTCGTGGTACGAAGATATATGGTAAGCGTCCAACACTCTGTGTACTAGATGACTTGAT 3981 | | |||||||||||||| | |||||| || || | || || || ||||||||||| Sbjct 1233 TATCCGTGGTACGAAGATCTTTGGTAAACGACCTTCGCTTGCAGTTCTCGATGACTTGAT 1174 Query 3982 TAGTGATGGTGATGCTAA--CTCCAAGACTAGCATG--GAAGCTATTAAAGACACCGTTT 4037 |||| ||||| || ||||| ||| ||| |||| ||||| || || |||| Sbjct 1173 CTCAGATGAAGATGCGAAGTCTCCA--ACTGCGATGGCGAAG--ATTAACGATACTGTTT 1118 Query 4038 ATAAAGGTGTGAACCATGCTCTTGACCCA-ACTCGTCGTAAAGTAATCTTCAATGGTACT 4096 | || ||| | |||| |||||| ||||| | ||| | | || || | ||||| ||| Sbjct 1117 ACAAGGGTTTACACCACGCTCTTCACCCACAAAAGTCAAAGACTATTC-TGAATGGGACT 1059 Query 4097 CCTTTTAATAAGGAAGACATTATCATTGAAGCAGTTGAGTCTGGTGCATGGGATGTCAAC 4156 || || | ||| | ||||| | | ||||| | ||||||||||||||||| || ||| Sbjct 1058 CCCTTCGACAAGAACGACATCGTGTATCAAGCAATCGAGTCTGGTGCATGGGAGGTGAAC 999 Query 4157 GTATGGCCTGTATGTGAGAAGTTCCCTTGTAGTAAAGAAGAATTT-CAGGGTGCATGGGA 4215 || ||||| || ||| || |||| || ||| | |||||| |||| || |||||| Sbjct 998 GTTTGGCCAGTGTGTAAGGAGTTTCC-TGTTGATAAGAAGGATTTCCAACCAGCATGGCC 940 Query 4216 TGACCGTTTCTCTTACGACTACATTAAAGCCCAATATGACAT-GGCAGTTAAGACTGGTA 4274 || ||||| | |||||| | | |||| | || ||| | || || | | | Sbjct 939 AGAACGTTTTACCTACGACCAGTTGAAAGAGGATTACGACTTCTTCAAGCAACAAGGTAA 880 Query 4275 AGTTGGCTGGCTTCTATCAGGAACTTATGCTCCGTATT-AGCTCTGAAGATGAG---AGA 4330 | ||| | | ||| |||||| |||||||| || ||| || || |||||| | Sbjct 879 ACTTGAGTCG-TTCCGTCAGGAGCTTATGCTTCGGATTCAG----GATGATGAGTCTCGT 825 Query 4331 CTGGTTCAGGATAGTGAAATTAGATGG-TATAGCAGACAGCAACTATTAAGGATGAAGTC 4389 |||||||||| |||| || | ||| | | | || | || | | || ||| Sbjct 824 TTGGTTCAGGAAGGTGACATCGGTTGGTTCCAACGGA-AACACATCCTTGCGAACAAGAA 766 Query 4390 CTGCTACAACTATTATATTACAACTGACTTTGCTACATCGGAGAAACAGACCAGTGACTA 4449 || || | || || || ||||||||||| || ||| |||||| || || || Sbjct 765 GGATTATAAGTTCTACATCACCACTGACTTTGCCACGTCGTCGAAACAAACTGCGGATTA 706 Query 4450 TAGTGTCATATCAGTTTGGGCTTATAGTTCTAATGGAGATTGGTTCTGGGTTGATGGTGT 4509 | || |||||| ||||| ||| || ||||| |||||| ||||||||| ||||| Sbjct 705 TTCCGTACAATCAGTATGGGCGTATGACTCGAATGGGGATTGGCACTGGGTTGACGGTGT 646 Query 4510 GGCTAATCGTCAGCTTATGGATAAAAACTTTGATGACCTGTTCCGTCTGGTTCAAGAATA 4569 | ||| ||| ||||||| | || || |||| ||| ||||| | || || Sbjct 645 TTGTGCTCGACAGACAATGGATACCTCAATCGACGATTTGTTTCGTTTGGTTGAGGAGTA 586 Query 4570 CCAACCACAAAACGTTGGTGTCGAAATCACAGGGCAGCAAGGTGGATTCATTTCGCTCCT 4629 | | ||||| | ||| ||||| || || || || ||||| ||||| || | | | | Sbjct 585 CAATCCACAGAGCGTCGGTGTTGAGATTACTGGTCAGCAGGGTGGGTTTA-TCCAATGGA 527 Query 4630 TCA-GAAAGAAATGATTAACCGTAATGTCTTCTTTAACTTTGCATCTTCTGAAGGTGGTA 4688 ||| | |||||| | |||| | | | | ||| ||| |||| | | |||| |||| Sbjct 526 TCATGCGTGAAATGGATTACCGGAGTATTTACTTCAACCTTGC-CCAGCAGAAG--GGTA 470 Query 4689 AGCCGGGTATACGTCCTGTAACCTCTAAGCTGTCACGCTTTAACCTGGTAGTTCCATGGT 4748 | |||||||| || || | || ||| ||| | ||||| ||||| ||||| | Sbjct 469 AACCGGGTATCCGACCCATGACAGATAAACTGAGTAGATTTAATCTGGTTGTTCCTCTAT 410 Query 4749 TCAAAGCTGGTAAGATGTACTTCCCGGAAGAGTTGAGAGAT--TCAACTATTATGGGTCT 4806 | || ||||| ||||| | ||||| ||| ||| |||| |||| || |||| | Sbjct 409 TTAAGGCTGGAAAGATCAAGTTCCCCTTGGAGATGAAAGATACTCAA--GTTCTGGGCTT 352 Query 4807 GTTCATGGGCCAGATTAAACTAGCTACCATTAATGGAATCAAAGGTAAGGATGACTGTAT 4866 |||||||| ||||| | ||||||| |||| | ||||||||||||||||| | Sbjct 351 GTTCATGGAACAGATCTCTTTGGCTACCAAAGATGGTTTGAAAGGTAAGGATGACTGCCT 292 Query 4867 TGATACTATCTCCATGCTG 4885 ||||| ||||| ||| || Sbjct 291 CGATACCATCTCTATGTTG 273 >seq76541 Length=11138 Score = 147 bits (162), Expect = 1e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 47753 ATGTCTTTAATGTCATCCTGAGCATAGTTACCAGCATACTCCTGAGCCTGGTCTTTTAGA 47812 ||||| | ||||| || ||||||||| || || ||||||||||||| | || ||| Sbjct 481 ATGTCATGGATGTCTTCAACAGCATAGTTTCCTGCGAACTCCTGAGCCTGAACCTTCAGA 540 Query 47813 CTAAGGTGATTACCAGCACAACTGTTAGTAGCCAGGTAGGTGATTAACTTAGTACAGTCC 47872 | | | ||||||||||| || || ||||| || ||||| | || ||||| ||| Sbjct 541 CCCAACTCGTTACCAGCACATGAATTGGTGGCCAGATACGTGATGAGCTGTGTACATTCC 600 Query 47873 CAGTTGCGTAGCATGATTTCCATACCATGCAGTAAGCCTTCTGTATCAATCAGGTTATCC 47932 ||||||||||| | || ||||| ||| | || | || ||| |||| | || |||| Sbjct 601 CAGTTGCGTAGGAGGACTTCCAGACCTTCGAGCATTCCCTCTTGGTCAAGGATGTGATCC 660 Query 47933 ATGAATAACTGATAGATAAGCACATACACGTCGTAGCTAATGTTGTGATACATC 47986 || || |||||||| || |||||||| ||||| |||| ||||||||||| ||| Sbjct 661 ATAAACAACTGATAAATCAGCACATAAACGTCATAGCAGATGTTGTGATAGATC 714 >seq266624 Length=731 Score = 105 bits (116), Expect = 3e-18 Identities = 178/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 14446 CAGATGCAGAACCAGGAAGCAGAAGCACTAACTGGTGTTAAAGCATTCTCTGGAGGTGTA 14505 ||| | |||||||| |||||||||||||| || || || ||| ||||||| || ||| | Sbjct 573 CAGCTCCAGAACCAAGAAGCAGAAGCACTTACCGGGGTGAAATCATTCTCCGGTGGTATT 514 Query 14506 ACTGGTGCAGCTTATGGAGATGTGGCTGCTGGTATTCGTGGTGCACTCGATGCAGCATCC 14565 |||||| || ||||| || || ||||||| || ||||| || || | |||| Sbjct 513 TCTGGTGATGCGTATGGTTCCGTTGCAACTGGTATCCGGGGTGCTCTGGACTCTACATCT 454 Query 14566 AAACGTGAGATGGCAATCCTTCGTCGATTAGCTAAGGGTATGGCAGAC-ATTGGTACTAA 14624 || |||||| || ||||||| | || || |||||| |||| || ||| || Sbjct 453 GTCCGGGAGATGAGCATTGTTCGTCGTCTGGCCAAAGGTATG-CAGAAGATCGGTGAGAA 395 Query 14625 GATTTGTGCAATGAATGCCGTATTCTTATCTGAGAAGGAAGTAGTACGTATTACCAATGA 14684 ||| ||||||||||| ||||| ||| ||||||| || ||| || || || Sbjct 394 GATCATCGCAATGAATGCTCAGTTCTTGGAAGAGCAGGAAGTTGTTCGTGGGACAAACGA 335 Query 14685 ACAGTACGTAGAAAT 14699 | ||| || ||||| Sbjct 334 AGAGTTTGTTGAAAT 320 >seq121189 Length=2370 Score = 95.1 bits (104), Expect = 6e-15 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 59638 TGAAATAATACTTGAGCTATCCCAGAACCAGCCGGGATATGCAGTTTCTTACGACCGTGA 59697 ||||||| |||||||| || ||| | || | |||||||| | || | ||||||| Sbjct 1953 TGAAATAGCACTTGAGCAATTCCACATCCTGATGGGATATGTATACCCTCGCTACCGTGA 1894 Query 59698 TAGACAAGTTCGAGGGTAAGATACCCTTTCCATCCTGGTTCTATTACGGTATTGAACACA 59757 || ||||| || | || | || |||||||| || ||||| || || || ||||| ||| Sbjct 1893 TAAACAAGCTCTAATGTTAAATGACCTTTCCAACCCGGTTCGATGACCGTGTTGAAAACA 1834 Query 59758 GATAATGCACGTCTTGCCCAGGTAGACTTATCGTGAACGATGGCTACACAGGAAGGA--G 59815 | ||||||| ||||| || || || |||||||| | | || ||| | | | Sbjct 1833 CTCAGCCCACGTCTGGCCCAAGTGGATTTGTCGTGAACAACACCAAC-CAG-ATCTACTG 1776 Query 59816 ACATGTTGAACTTCTCAATTGCTGAAGCCA 59845 ||||||||||| ||||| || ||||||| Sbjct 1775 GCATGTTGAACTCTTCAATGGCCGAAGCCA 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231324242994944