Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11950 158 2e-33 seq137513 114 3e-20 seq78081 109 1e-18 seq271769 87.8 4e-12 >seq11950 Length=2906 Score = 158 bits (174), Expect = 2e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | |||||| ||||| |||||||| || || || || ||||| || || Sbjct 887 CCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAC 828 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| ||||| || || ||||| || || || | || |||||||| || Sbjct 827 AGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 768 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTAC 82762 ||||| ||||| ||||||||||| || || || || ||||| || || | ||| || || Sbjct 767 ATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTC-TGAGGCCTCAAC 709 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | ||| || ||||| || || | ||||| ||||| || |||||| Sbjct 708 TTCAAGAGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||| ||||| ||||| || || || ||| | | ||| ||||| |||||| Sbjct 179 TGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCATCTTCCAGTTGT 120 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| || | || || ||||| || ||||||||||| ||||| ||||| Sbjct 119 TTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTG 60 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| |||||||||||| || || || || | ||| || ||||| || || Sbjct 59 GCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGAGTGATGGTCTTTCCAGT 1 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| |||||||| |||| ||| || ||||| || || || || || || Sbjct 1115 CCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGAC 1056 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | ||| || || || ||||| || ||||| ||||| | | || || ||||| || Sbjct 1055 AAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 996 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||||||||| | || ||||||||||| || || || || || Sbjct 995 ATTCCTTCCTTGTCTTGAATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACC 936 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| || || | || || ||||| ||||||||| Sbjct 935 TCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCATT 888 Score = 131 bits (144), Expect = 3e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || ||||| || || ||||| ||||| || || || || || || | | ||| Sbjct 1332 ACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACC 1273 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| ||||| || ||||| | | || |||||||| || |||||||| || Sbjct 1272 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTT 1213 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| | || ||||||||||| || ||| || || || || | ||| || Sbjct 1212 GTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAAT 1153 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || | ||||| || || ||||||||| Sbjct 1152 GGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| || || |||||||||||||| || | | |||||| ||||| || Sbjct 635 TGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACCGTCCTCTAGCTGC 576 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| || || || | || |||||||| || ||||| ||||| ||||||||||| Sbjct 575 TTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTA 516 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || ||||| || || | ||| || || || | || || || ||||| || Sbjct 515 GCCTTGACGTTCTCAATGGTGTC-TGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAGT 457 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 456 TAGAGTCTTGACGAAGATTTGCATT 432 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || || || ||||| || || || || ||||| || ||| | | || ||| Sbjct 416 AGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCT 357 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| ||||| |||||||| || | ||||||||||| || |||||||| ||||| Sbjct 356 TCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATCC 297 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGT 82777 || ||||| || || || || ||||| || || | ||| || || || | || || || Sbjct 296 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC-TGAGGCCTCAACCTCTAGTGTGATTGT 238 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || | ||||| || || || |||||| Sbjct 237 TTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 >seq137513 Length=5763 Score = 114 bits (126), Expect = 3e-20 Identities = 289/437 (66%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 198187 TGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTACTCACGCAT 198246 |||| ||||||||||| ||||||||| | || || ||||| | | | || | | Sbjct 2547 TGTCAGATAATTTTTGCTACTATAATGAGCACTATGATAGTCTCCTTGGAGCCCATGACT 2488 Query 198247 GGGCTAG-AAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATCTATTCTATT 198305 ||||| | ||| | | | | ||||| | || ||||| ||||| || | ||| | | Sbjct 2487 GGGCTCGGAAGTCCCTGA-AGGATCATAAAAAGGATCCGCGAAAGCATGTGTATACCAGA 2429 Query 198306 AAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATG 198365 | | || | | | | || ||||| ||| |||||||| | || || || | Sbjct 2428 GAGAAGCTTGCGAGTGGCAAGACCCATGATGATCTCTGGAATGCCGCACAGATTCAACTT 2369 Query 198366 ATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAA 198425 | || || ||||||||| | ||| | ||||||| ||||||||||||||| | || Sbjct 2368 GTGTCGGAGGGGAAAATGCATGGGTTTATGCGAATGTATTGGGCTAAAAAGATATTGGAG 2309 Query 198426 TGGACAAGAACACCGGAAGACGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAA 198485 ||||| | || || || |||| || | ||| | | || || | || | Sbjct 2308 TGGACGGATAGTCCTGAGCGTGCCCTGAGGGATGCTCTCTTTTTGAATGATCACTATGCC 2249 Query 198486 CTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACAT 198545 ||||| |||| ||| | || || | || || |||||||| ||||| || | ||| Sbjct 2248 CTAGATGGCAATGATGCCAATGGGTTTGTTGGGGTCATGTGGTCCATTTGTGGGGTTCAT 2189 Query 198546 GATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGT 198605 |||| | ||||| ||||| ||| ||||||||||| ||||||||| ||||| ||| Sbjct 2188 GATCAGGGATGGAAGGAAAGGGATATTTTTGGGAAGATTCGATATATGACCTATGATGGT 2129 Query 198606 TCTAAGAAAAAATTTGA 198622 | |||| || ||||| Sbjct 2128 TGTAAGCGGAAGTTTGA 2112 >seq78081 Length=4256 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || || || || || ||| || || || || || ||||| ||||||| Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | | |||||||||||||| ||||| ||||||||||| || || | || ||||||| Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTT 3094 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || |||||| || || || || | || || || || || || | ||||| || | Sbjct 3095 CGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGA 3154 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 3155 AAATCTGCAT 3164 >seq271769 Length=1390 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || || || || | | || || || || || || ||||| ||||| Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | || |||||||| || |||||||||||||| || ||||| | || || || || Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || ||||| || || || || | || || |||||||| || | ||||| || || Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 82803 ATCTGCAT 82810 || ||||| Sbjct 668 ATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978196508560824