Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq137513 123 4e-23 >seq137513 Length=5763 Score = 123 bits (136), Expect = 4e-23 Identities = 292/436 (67%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 182872 TCGGATAATTTTTGTTACTATAATAAACATTACGATAGTGTTCAGTCTACTCACGCATGG 182931 || ||||||||||| ||||||||| | || || |||||| | | | || | ||| Sbjct 2545 TCAGATAATTTTTGCTACTATAATGAGCACTATGATAGTCTCCTTGGAGCCCATGACTGG 2486 Query 182932 GCTAG-AAGAACATTAGAAGATCACGTTAATGATCCTAGAAAGTATATCTATTCTATTAA 182990 ||| | ||| | | | | ||||| || ||||| ||||| || | ||| | | | Sbjct 2485 GCTCGGAAGTCCCTGA-AGGATCATAAAAAGGATCCGCGAAAGCATGTGTATACCAGAGA 2427 Query 182991 ACAACTCGAAAA-GGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGA 183049 | || | | |||| | || ||||| ||| |||||||| |||| || || | Sbjct 2426 GAAGCTTGCGAGTGGCA-AGACCCATGATGATCTCTGGAATGCCGCACAGATTCAACTTG 2368 Query 183050 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAAT 183109 || || || ||||||||| | ||| | |||||||| ||||||||||||||| | || | Sbjct 2367 TGTCGGAGGGGAAAATGCATGGGTTTATGCGAATGTATTGGGCTAAAAAGATATTGGAGT 2308 Query 183110 GGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAGTACGAAC 183169 |||| | ||| || ||| |||| || | ||| | |||| || | || | | Sbjct 2307 GGACGGATAGTCCTGAGCGTGCCCTGAGGGATGCTCTCTTTTTGAATGATCACTATGCCC 2248 Query 183170 TAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACG 183229 |||| || | ||| | || || | || || |||||||| ||||| || | || | Sbjct 2247 TAGATGGCAATGATGCCAATGGGTTTGTTGGGGTCATGTGGTCCATTTGTGGGGTTCATG 2188 Query 183230 ATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTT 183289 || | ||||| ||||| ||| ||||| ||||| ||||||||| ||||| ||| Sbjct 2187 ATCAGGGATGGAAGGAAAGGGATATTTTTGGGAAGATTCGATATATGACCTATGATGGTT 2128 Query 183290 CTAAGAAGAAATTTGA 183305 |||| ||| ||||| Sbjct 2127 GTAAGCGGAAGTTTGA 2112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900151963413760