Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq124497 129 6e-25 seq11950 120 3e-22 seq124498 113 4e-20 seq271769 100 3e-16 seq78081 86.0 6e-12 >seq124497 Length=910 Score = 129 bits (142), Expect = 6e-25 Identities = 251/368 (68%), Gaps = 2/368 (1%) Strand=Plus/Minus Query 149409 TGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGA-GCGT 149467 || || |||| ||||| ||||| | |||| |||||| || | | || | |||| Sbjct 809 TGGACATTGATCCCGATCCCGCCAGCAAACTTGGAGATGATGGC-CGTTTGCTTAAGCGT 751 Query 149468 CGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTG 149527 |||||||||||||||| ||| |||||| || | ||||| ||| | | || Sbjct 750 GTCGTAGATGCCCTCGATGGAGTCCGAGGCCATGGTGAGTAAGAAGCAGGAGGAGAGCTG 691 Query 149528 CGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCT 149587 || | ||| | || ||| | |||||| ||| |||||||| ||| |||| Sbjct 690 TGGTCGGGGTGTGGCTGCGTTGAAGAGCGTGGGGGAGGCATGTGTAAAGTATCCCTGGGA 631 Query 149588 CATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGAC 149647 | | | ||||| ||||| | || |||| ||| || || |||||||| | || || Sbjct 630 GAGGAGGTTGTACGTCTCGATGATGCTCTCCACGTCTTCCCCGTGGATGCCCACGGACAC 571 Query 149648 GCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCC 149707 ||||||| ||| ||||| || |||||| | | || || || || ||||| | ||||| Sbjct 570 ACGCATCAACATGTGCTGTGGGCGCTCCACGATCTTCTTCCCGATCTTGAGGAGGTAGCT 511 Query 149708 GTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 || || |||||| |||| ||||| |||||| |||||| ||| ||| | | ||||| Sbjct 510 CCGCTCCAGGGTCTTGAAGCCGAAGTAGTTGTAGGAAAAGTCCCGGTCGTAGACGATGGC 451 Query 149768 GGCGTCGA 149775 || || || Sbjct 450 GGAGTTGA 443 >seq11950 Length=2906 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || || || ||||| ||||| || ||| ||| |||||| |||| Sbjct 636 ATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTGCGACC-GTCCTCTAGCT 578 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| ||||||| |||||||| || || || || || |||||||| |||| Sbjct 577 GCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCT 518 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| | || ||| || || | |||| |||||||| | Sbjct 517 TAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGTGTGATTGTTTTGCCAG 458 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| || ||||| Sbjct 457 TTAGAGTCTTGACGAAGATTTGCAT 433 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||||| || || ||||| || || || | | | ||||| || Sbjct 1094 AAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCA-TCCTCAAG 1036 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || | ||||||||||| || || || ||||||||||| || Sbjct 1035 TTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGAAT 976 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| ||||| || || | |||| ||| || || Sbjct 975 CTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCC 916 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||| || || |||||||| Sbjct 915 GGTAAGAGTTTTAACAAAGATCTGCAT 889 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || ||||| || ||||| ||| | ||| ||| | |||||||| Sbjct 1322 AAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCA-TCCTCGAG 1264 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || | |||||||| || || || || ||||| ||||| ||| Sbjct 1263 TTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGAT 1204 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | ||||| || || | || | ||||||||| Sbjct 1203 CTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTTTGCC 1144 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 1143 AGTGAGGGTCTTGACGAAAATCTGCAT 1117 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || || || || ||| || ||| ||| |||||| ||||||||||| Sbjct 857 GTAGACTCCTTTTGAATGTTATAGTCGGACAGGGTGCGACC-GTCCTCTAGCTGCTTGCC 799 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| |||||||| || || || || || |||||||| ||||| ||| Sbjct 798 AGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTT 739 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | || ||| || || | |||| ||| || || || || || Sbjct 738 GACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTAAGGGT 679 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||| ||||| Sbjct 678 CTTGACAAAAATTTGCAT 661 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| |||||||| ||| | || ||| | || || || | Sbjct 180 ATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCA-TCTTCCAGTT 122 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | || || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 121 GTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCT 62 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||| || | ||||| || |||| |||| ||| || || | Sbjct 61 TGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGAGTGATGGTCTTTCCAG 2 Query 133636 T 133636 | Sbjct 1 T 1 >seq124498 Length=1304 Score = 113 bits (124), Expect = 4e-20 Identities = 253/376 (67%), Gaps = 8/376 (2%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||||| ||||||||||| || || || | ||| |||||| |||||| || ||| Sbjct 384 CTCATCCGGTGCGCTGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCC 325 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | ||||| ||||||| ||| | |||||| || |||||||| ||||| || || || Sbjct 324 TAGGTTCTGTTGATTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCC 265 Query 148970 AGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTC--CTGCGCGCGCACTTGCTGC 149027 || || | |||| || | ||| | ||| || || || | || || || Sbjct 264 CGTCTCGATTTGCGACTCAATGATG--GCCTCCCAGATCTTTTGAGCCGGGACCTGTCGC 207 Query 149028 TCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGC 149085 || || ||| ||| || | ||| |||| | ||| || ||||| || ||| Sbjct 206 CTATAATTCCCTTCCGCCTCATACTTCAAG--TACAAGCTCTCAAAGGCCTCTCCCCAGC 149 Query 149086 AATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACA 149145 | || | | || |||| || ||||||||||| | ||| ||||| ||| | | || Sbjct 148 AGTCCGCTAATCCAGGGCTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCA 89 Query 149146 CGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGT 149205 | |||||||| || ||||| || | |||||| ||||| | | ||| | ||| | | Sbjct 88 CACGCTTCATGAAGAGATCCGGGATCCAGAGGGCGTAGAACAAGTCCCTGGCCCGGTTTT 29 Query 149206 CTTCGGCGCCCATGTT 149221 | ||||| ||| |||| Sbjct 28 CCTCGGCCCCCGTGTT 13 >seq271769 Length=1390 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || | |||||||| || || || || |||||||| Sbjct 815 TCCTCAAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCCTTA 756 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | || |||| ||||||||| || | ||||| | Sbjct 755 TCCTGGATCTTGGTCTTCACGTTCTCGATGGTATCGGAGGGCTCCACCTCAAGGGTGATG 696 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || ||||| || ||||| Sbjct 695 GTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 661 >seq78081 Length=4256 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || || | || | ||||| || || |||||||| || ||||| Sbjct 3010 TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTA 3069 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | || | || || | |||||| || |||| ||| | | Sbjct 3070 TCTTGGATTTTGGTCTTAACATTTTCGATGGTATCAGAGGGCTCAACCTCGAGGGTAATG 3129 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || |||||||||||||| Sbjct 3130 GTTTTACCCGTGAGGGTCTTAACGAAAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481676762779840