Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024786.1 Length=71248 Score E Sequences producing significant alignments: (Bits) Value seq121188 309 1e-79 seq266624 127 9e-25 seq76541 107 9e-19 seq282581 86.0 3e-12 >seq121188 Length=15723 Score = 309 bits (342), Expect = 1e-79 Identities = 848/1276 (66%), Gaps = 39/1276 (3%) Strand=Plus/Plus Query 66526 CAGCATGGAGATAGTATCAATACAGTCATCCTTACCTTTGATTCCATTAATGGTAGCTAG 66585 || ||| ||||| ||||| | ||||||||||||||||| | |||| ||||||| | Sbjct 273 CAACATAGAGATGGTATCGAGGCAGTCATCCTTACCTTTCAAACCATCTTTGGTAGCCAA 332 Query 66586 TTTAATCTGGCCCATGAACAGACCCATAATAGTTGTATCTCTCAACTCCTCTGGGAAGTA 66645 ||||| ||||||||| |||| || |||||| ||| |||| ||||| | Sbjct 333 AGAGATCTGTTCCATGAACAAGCCCAGAACTTGAGTATCTTTCATCTCCAAGGGGAACTT 392 Query 66646 CATCTTACCAACCTTGAACCATGGAACTACCAGGTTAAAGCGTGACAGCTTAGAGGTTAC 66705 ||||| ||| |||| || ||||| ||||| ||||| | ||| ||| || | Sbjct 393 GATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTATCTGTCAT 452 Query 66706 AGGACGGATGCCTGGCTTACCACCCTCAGAGGATGCAAAGTTAAAGAAGACATTACGGTT 66765 || ||||| || || |||| || || | | |||| ||| ||| | | | | |||| Sbjct 453 GGGTCGGATACCCGGTTTAC--CCTTCTGCTG-GGCAAGGTTGAAGTAAATACTCCGGTA 509 Query 66766 AATCATTTCTTTC-TGAAGAAGTGAGATGAATCCACCCTGCTGCCCTGTGACTTCAATAC 66824 | |||||| | ||| | || ||| || ||||||||||| || || | |||| || Sbjct 510 ATCCATTTCACGCATGATCCATTG-GATAAACCCACCCTGCTGACCAGTAATCTCAACAC 568 Query 66825 CAACATTTTGTGGTTGGTATTCTTGAACCAGACGGAACAAGTCATCAAAGTTTTTATCCA 66884 | || | ||||| | ||| || | ||||| ||| ||||| || || | |||||| Sbjct 569 CGACGCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGATTGAGGTATCCA 628 Query 66885 TAAGCTGACGATTAGCCACACCGTCAACCCAGAACCAATCTCCATTAGAACTATAAGCCC 66944 | ||| ||| | ||||||||||||||| |||||| ||||| || ||| |||| Sbjct 629 TTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGCCC 688 Query 66945 AAACTGATATGACACTGTAGTCACTGGTCTGTTTCTCCGAGGTAGCAAAGTCGGTCGTAA 67004 | |||||| || || || || |||||| ||| || |||||||| || || | Sbjct 689 ATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGA 748 Query 67005 TGTAATAGTTGTAGCAAGACTTCATCCTC-AATAGCTGT-TGTCTGCT-GTACCATTTAA 67061 |||| | || | || |||| | || | | ||| | || | | | |||| | Sbjct 749 TGTAGAACTTAT---AATCCTTCTTGTTCGCAAGGATGTGTTTCCGTTGGAACCAACCGA 805 Query 67062 TCTCACTATCCTGAACAAGACG---TTCATCTTCAGAACT-AATACGAAGCATAAGTTCC 67117 | |||| |||||||| | ||| ||||| || || ||| ||||||||||| ||| Sbjct 806 TGTCACCTTCCTGAACCAAACGAGACTCATCATC----CTGAATCCGAAGCATAAGCTCC 861 Query 67118 TGATAGAAGCCAGCCAACTTACCGGTCTTAACTG-CCATGTCATATTGGGCTTTTATGTA 67176 ||| ||| | | ||| || | | || || | ||| || | |||| | | Sbjct 862 TGACGGAA-CGACTCAAGTTTACCTTGTTGCTTGAAGAAGTCGTAATCCTCTTTCAACTG 920 Query 67177 GTCATATGAAAAACGGTCATCCCATGCACCCTGAAACTCTTCCCTA-CTACAGGGAAACT 67235 ||| || | |||||| || |||||| || || || | | || | ||| ||||||| Sbjct 921 GTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACA-GGAAACT 979 Query 67236 TCTCACACACAGGCCATACGTTGACATCCCATGCACCAGACTCAACTGCTTCAATAATGA 67295 || |||||| ||||| ||||| || ||||||||||||||||| | ||||| | | || Sbjct 980 CCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTTGATACACGA 1039 Query 67296 TGTCTTCCTTATTAAATGGAGTACCATTGAAGATTACTTTACGACGTGT-TGGGTCAAGA 67354 |||| | ||| | || ||||| ||||| ||| || | | ||| | | ||||| |||| Sbjct 1040 TGTCGTTCTTGTCGAAGGGAGTCCCATT-CAGAATAGTCTTTGACTTTTGTGGGTGAAGA 1098 Query 67355 GCATGGTTCACACCTTTATAGACAGTATCCTTAATAGCTT--CCATACTCGTCTTAGAGT 67412 || |||| | ||| || || |||||||| ||||| ||| |||| || ||| | Sbjct 1099 GCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCATCGCAGTTGGAGACT 1156 Query 67413 TAGCATCACCATCACTAATCAAGTCATCCAGTACACAGAGCGTCGGACGTTTACCATATA 67472 | ||||| |||| ||||||||||| || || |||| || ||||||||| | | Sbjct 1157 TCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCGAAGGTCGTTTACCAAAGA 1216 Query 67473 TCTTCGTACCACGAAGACCTGTCTTAGCACCAAACAACTTAACACCCAGTCGATGTCCTT 67532 ||||||||||||| | ||| | ||| ||||| |||| ||||| | || ||| Sbjct 1217 TCTTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACACCAAACTTAT-TCCNN 1275 Query 67533 CTGCATTACGGAACTCTAACAGGTTATCTGT------AAAGGTAGCTTCAGGTATCCACT 67586 || | || |||||| | ||| ||||| || |||||| || ||||| | Sbjct 1276 CTACGTT---GAACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTTCTGGCATCCAGT 1332 Query 67587 GTTGAAGGAACTCACTATTCTTGTATCGGAACTCAATGTTCTTACGTGCAGACTTAGCAC 67646 | || || ||||| | | || || | || || ||| || ||||| ||| Sbjct 1333 GCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAGCGGACTTCACAC 1392 Query 67647 CGTTATCCATTGAGTCAGATACGTAAATCATCCCTTCTACCTTGCCCAGACTTGGTAAGT 67706 | || ||||| ||||| || | || | ||| | || || || || | || || | | Sbjct 1393 CATTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTCCCAAAACCGGGAAGAT 1452 Query 67707 GCCCAAACACTGCCAAGAACAAAGTAAAGTATTCCATGAACACAGCAGTCTTACCTGCAC 67766 | |||| |||| |||| || | |||||| | ||||| || || || | | || Sbjct 1453 GATTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTGGTTTTCGCAGAAC 1512 Query 67767 CACGGAAACACAGGTT 67782 ||||||||||||| || Sbjct 1513 CACGGAAACACAGATT 1528 Score = 93.3 bits (102), Expect = 2e-14 Identities = 69/78 (88%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 6604 GTACATGACTGCTTCCGTTGTCATCCTAACTATGGCAATGACCTGCGTCGTCAGTACAAT 6663 ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| Sbjct 14198 GTACATGACTGCTTCCGCTGTCACCCGAACTATGGCAATGATCTGCGTCGTCAGTACAA- 14256 Query 6664 CAGATTC-TGTCTGACAT 6680 || | || || ||||||| Sbjct 14257 CACAATCATGGCTGACAT 14274 >seq266624 Length=731 Score = 127 bits (140), Expect = 9e-25 Identities = 226/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 57150 TTCTGGTTATCAATTTCAGCAGTGTTAATATCAACCTCAATGTCGAAGTTACCTTTAAGA 57209 ||||| | ||||| | || ||| |||||||||| | ||| |||||||| | Sbjct 248 TTCTGTTCATCAACTGAGGCTGTGGAGATATCAACCTTCAGGTCAAAGTTACCAGCCAAC 307 Query 57210 TCTTCACGGTTAATCTCTACATACTGTTCGTTAGTAATACGTACTACTTCCTTCTCTGAT 57269 || ||| || || ||| ||| |||||| || ||| || ||||||| |||| Sbjct 308 TCAGAACGAGAGATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCC 367 Query 57270 AAGAACACAGCATTCATTGCGCAAATCTTAGTACCAAT-GTCTGCCATACCCTTAGCTAA 57328 |||||| ||||||||||||| ||||| ||| || |||| |||||| || || | Sbjct 368 AAGAACTGAGCATTCATTGCGATGATCTTCTCACCGATCTTCTG-CATACCTTTGGCCAG 426 Query 57329 TCGACGAAGGATTGCCATCTCGCGTTTAGATGCTGCATCAAGTGCACCACGAATACCAGC 57388 ||||||| || |||||| || ||||| | || || ||||| || ||||||| Sbjct 427 ACGACGAACAATGCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGT 486 Query 57389 AGCAACATCTCCATAAGCTGAACCAGTTACGCCACCAGAGAATGCTTTAACACCTGTTAG 57448 ||||| ||||| || ||||| | ||||| ||||||| ||| || || || || Sbjct 487 TGCAACGGAACCATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAG 546 Query 57449 TGATTCAGCTTCCTGGTTTTGCATCTG 57475 || ||| ||||| ||||| || | ||| Sbjct 547 TGCTTCTGCTTCTTGGTTCTGGAGCTG 573 >seq76541 Length=11138 Score = 107 bits (118), Expect = 9e-19 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23233 GATGTATCACAACATTAGCTATGACGTGTACATACTTATCTATCAGTTATTCATGGATAA 23292 ||| ||||||||||| |||||||||| || | || || |||||||| || |||||| | Sbjct 714 GATCTATCACAACATCTGCTATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATCA 655 Query 23293 CCTGATTGATACGGAAGGCTTACTAAATGGCATGGAGATCATGCTACGTAATTGGGACTG 23352 | | |||| || || | || | || |||| || | ||||| || ||||| || Sbjct 654 CATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAATG 595 Query 23353 TACTAAGTTAATCACCTACCTGGCTACTAACAGTTGTGCCGGTAATCATCTTAGTCTGAA 23412 ||| || | ||||| || ||||| || || ||||| ||||| | | ||||||| Sbjct 594 TACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAA 535 Query 23413 AGAACAGGCTCAGGAATATGCTGGTAACTATGCT 23446 | ||||||||||| | || || ||||||||| Sbjct 534 GGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCT 501 >seq282581 Length=1216 Score = 86.0 bits (94), Expect = 3e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 28411 GCAGAGTATAAACGTGCTGGGGCATTC-CCATTCACATTCGACTCTGGTACAGCACCTGC 28469 || || ||||||||| | ||| | | || |||| |||||||| || || | ||||| Sbjct 731 GCTGACTATAAACGT-CAGGGTTTTGCACCGTTCATCTTCGACTCAGGAACCGGGCCTGC 673 Query 28470 TGTAAAACAGCTTCGTCACAAACTACTTATGGCTGGTTGTGGCGCTATTAACTTACAGAT 28529 ||| || |||||||| |||| || || |||| ||| | || ||||| ||||| Sbjct 672 TGTGAAGCAGCTTCGATACAAGCTCCTGTTGGCCAAGAATGGTTCGATCAACTTCCAGAT 613 Query 28530 TGATGAGATTGGTTCCAACCTCATTGCCAACGTTGAAGTGCTTAAC 28575 |||||||| ||||||||||| | |||| ||||||||| ||| Sbjct 612 GGATGAGATCGGTTCCAACCTTCAAGGCAACACTGAAGTGCTCAAC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227067269786984