Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_024790.1 Length=71778 Score E Sequences producing significant alignments: (Bits) Value seq121188 268 4e-67 seq76541 127 9e-25 seq266624 107 9e-19 seq121189 100 1e-16 seq282581 89.7 2e-13 >seq121188 Length=15723 Score = 268 bits (296), Expect = 4e-67 Identities = 836/1276 (66%), Gaps = 39/1276 (3%) Strand=Plus/Plus Query 66595 CAGCATGGAGATAGTATCAATACAGTCATCCTTACCTTTGATTCCATTAATGGTAGCTAG 66654 || ||| ||||| ||||| | ||||||||||||||||| | |||| ||||||| | Sbjct 273 CAACATAGAGATGGTATCGAGGCAGTCATCCTTACCTTTCAAACCATCTTTGGTAGCCAA 332 Query 66655 TTTAATCTGGCCCATGAACAGACCCATAATAGTTGTATCTCTCAGCTCTTCCGGGAAGTA 66714 ||||| ||||||||| |||| || |||||| ||| ||| ||||| | Sbjct 333 AGAGATCTGTTCCATGAACAAGCCCAGAACTTGAGTATCTTTCATCTCCAAGGGGAACTT 392 Query 66715 CATCTTACCAACTTTGAACCATGGAACTACCAGGTTAAAGCGTGACAGCTTAGAGGTTAC 66774 ||||| ||| | || || ||||| ||||| ||||| | ||| ||| || | Sbjct 393 GATCTTTCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTATCTGTCAT 452 Query 66775 AGGACGGATGCCCGGCTTACCACCCTCAGAGGATGCAAAGTTAAAGAATACATTACGGTT 66834 || ||||| ||||| |||| || || | | |||| ||| ||| | | | | |||| Sbjct 453 GGGTCGGATACCCGGTTTAC--CCTTCTGCTG-GGCAAGGTTGAAGTAAATACTCCGGTA 509 Query 66835 AATCATTTCTTTC-TGAAGAAGGGAGATGAATCCACCTTGCTGTCCTGTGACCTCGACTC 66893 | |||||| | ||| | | ||| || ||||| ||||| || || | ||| || | Sbjct 510 ATCCATTTCACGCATGATCCATTG-GATAAACCCACCCTGCTGACCAGTAATCTCAACAC 568 Query 66894 CAACGTTTTGAGGTTGGTATTCTTGAACCAGACGGAATAAGTCGTCAAAGTTTTTATCCA 66953 | ||| | || || | ||| || | ||||| ||| || || ||||| | |||||| Sbjct 569 CGACGCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGATTGAGGTATCCA 628 Query 66954 TAAGCTGACGATTAGCCACACCATCAACCCAGAACCAATCTCCATTAGAACTATATGCCC 67013 | ||| ||| | ||||| ||||||||| |||||| ||||| || ||| |||| Sbjct 629 TTGTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGCCC 688 Query 67014 AAACTGATATGACACTGTAGTCACTGGTCTGTTTCTCCGAAGTAGCAAAGTCAGTTGTAA 67073 | |||||| || || || || |||||| ||| || ||||||||||| || | Sbjct 689 ATACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGA 748 Query 67074 TGTAATAGTTGTAGCAGGACTTCATCCTTAATAGTTGCTGTCTGCT-GTACCATTTAATC 67132 |||| | || || ||| || | | || | || | | | |||| || Sbjct 749 TGTAGAACTTATAATCCTTCTTGTTCGCAAGGATGTG-TTTCCGTTGGAACCAACCGATG 807 Query 67133 TCGCTATCCTGAACAAGACG---CTCATCTTCAGAACT-AATACGAAGCATAAGTTCCTG 67188 || | |||||||| | ||| |||||| || || ||| ||||||||||| ||||| Sbjct 808 TCACCTTCCTGAACCAAACGAGACTCATCATC----CTGAATCCGAAGCATAAGCTCCTG 863 Query 67189 GTAGAAGCCAGCCAGCTTACCAGTCTTAGCTGCCATA--TCGTATTGGGCTTTGATGTAG 67246 ||| | || ||||| | | ||| | | ||||| | |||| | | | Sbjct 864 ACGGAACGACTCAAGTTTACC--TTGTTGCTTGAAGAAGTCGTAATCCTCTTTCAACTGG 921 Query 67247 TCGTAAGAGAAACGGTCATCCCATGCACCCT-GAAACTCTTCTTCACTGCATGGGAACTT 67305 ||||| | ||||| || |||||| | |||| |||||| | || || |||| Sbjct 922 TCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACA-GGAAACTC 980 Query 67306 CTCGCATACAGGCCATACGTTCACATCCCATGCACCAGACTCAACTGCTTCTATA-ATAA 67364 || || || ||||| |||||||| ||||||||||||||||| | ||||| ||| | | Sbjct 981 CTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTT-GATACACGA 1039 Query 67365 TGTCTTCCTTATTAAAGGGAGTACCATTAAAGATTACTTTACGACGGGT-AGGGTCAAGA 67423 |||| | ||| | |||||||| ||||| ||| || | | ||| | |||| |||| Sbjct 1040 TGTCGTTCTTGTCGAAGGGAGTCCCATT-CAGAATAGTCTTTGACTTTTGTGGGTGAAGA 1098 Query 67424 GCATGGTTCACACCTTTATAGACAGTATCCTTAATAGCTT--CCATACTCGTCTTAGAGT 67481 || |||| | ||| || || |||||||| ||||| ||| |||| || ||| | Sbjct 1099 GCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT--CTTCGCCATCGCAGTTGGAGACT 1156 Query 67482 TAGCATCACCATCACTAATCAAGTCATCCAGTACACAGAGCGTCGGACGTTTACCATATA 67541 | ||||| |||| ||||||||||| || || |||| || ||||||||| | | Sbjct 1157 TCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCGAAGGTCGTTTACCAAAGA 1216 Query 67542 TCTTCGTACCACGAAGACCTGTCTTAGCACCAAACAACTTAACACCCAGTCGATGTCCTT 67601 ||||||||||||| | ||| | ||| ||||| |||| ||||| | || ||| Sbjct 1217 TCTTCGTACCACGGATACCAGACTTGGCACCGAACATACGGACACCAAACTTAT-TCCNN 1275 Query 67602 CTGCATTACGGAACTCTAACAGGTTATCTGT------AAAGGTAGCTTCAGGTATCCACT 67655 || | || |||||| | ||| ||||| || |||||| || ||||| | Sbjct 1276 CTACGTT---GAACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTTCTGGCATCCAGT 1332 Query 67656 GTTGAAGGAACTCACTGTTTTTATATCGNNNNNNNNNNNNNNTACGTGCAGACTTAGCAC 67715 | || || ||||| | ||| || ||| || ||||| ||| Sbjct 1333 GCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGATCGACTCACGAGCGGACTTCACAC 1392 Query 67716 CGTTATCCATTGAGTCAGATACGTAAATCATTCCTTCTACTTTCCCCAGACTTGGTAAGT 67775 | || ||||| ||||| || | || | ||| | || |||||||| | || || | | Sbjct 1393 CATTGTCCATGGAGTCCGAAATATACAACATGCTTTGGACTTTCCCAAAACCGGGAAGAT 1452 Query 67776 GCCCAAACACTGCCAAGAACAAAGTAAAGTATTCCATGAACACAGCAGTCTTACCTGCAC 67835 | |||| |||| |||| || | |||||| | ||||| || || || | | || Sbjct 1453 GATTGAACATCGCCAGATACAACGTCATGTATTCAAAGAACAAAGTGGTTTTCGCAGAAC 1512 Query 67836 CACGGAAGCACAGATT 67851 ||||||| |||||||| Sbjct 1513 CACGGAAACACAGATT 1528 Score = 84.2 bits (92), Expect = 1e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 7084 GTACACGACTGCTTCCGTTGTCATCCTAACTATGGCAATGACTTGCGTCGTCAGTACAAT 7143 ||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct 14198 GTACATGACTGCTTCCGCTGTCACCCGAACTATGGCAATGATCTGCGTCGTCAGTACAA- 14256 Query 7144 CAGATTC-TGTCTGACAT 7160 || | || || ||||||| Sbjct 14257 CACAATCATGGCTGACAT 14274 >seq76541 Length=11138 Score = 127 bits (140), Expect = 9e-25 Identities = 285/423 (67%), Gaps = 4/423 (1%) Strand=Plus/Minus Query 23595 GATGTATCACAACATTAGCTATGACGTGTACGTGCTTATCTATCAGTTATTCATGGATAA 23654 ||| ||||||||||| |||||||||| || ||||| || |||||||| || |||||| | Sbjct 714 GATCTATCACAACATCTGCTATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATCA 655 Query 23655 CCTGATTGATACGGAAGGCTTACTGCACGGCATGGAAATCATGCTACGTAATTGGGACTG 23714 | | |||| || || | || | || ||||| || | ||||| || ||||| || Sbjct 654 CATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAATG 595 Query 23715 TACTAAGTTAATTACCTATCTGGCTACTAACAGCTGTGCCGGTAATCACCTTAGTCTGAA 23774 ||| || | || || |||||||| || || ||||| ||||| | | ||||||| Sbjct 594 TACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAA 535 Query 23775 AGAACAGGCTCAGGAATATGCTGGTAACTATGCTCAGGATGACATTAAAGACATTCGTCT 23834 | ||||||||||| | || || ||||||||| || ||||| | ||||| | Sbjct 534 GGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCA 475 Query 23835 TATTCCTAATGAGCAA-CTGTTACGCTACAACCTCATTGATGGTTTGTGTACGTGGTACA 23893 || ||| || || || || ||||||||| | ||||| | | ||| ||||| Sbjct 474 GATCCCT-CTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATG 416 Query 23894 CCTACGAGAAGCACTGGGATACTCTCATTGCTGATGACCAATTAGATGTTTACAACAATA 23953 |||| | || || || | | || || || || | | | ||| | Sbjct 415 TCTACAATAAACATCATTCCACGATGGTCGCAGACGATCAGGAATACATCTACGTTGAGC 356 Query 23954 TCTTTAAACCAGCCTGTGA-AGACATTATTCAGATGCAGTTAACCGGTATGCCCATGAAT 24012 | || ||| || |||||| ||||| ||||| |||||||| || ||||||||||| || Sbjct 355 TGTTCAAA-AAGGCTGTGATCGACATCATTCAAATGCAGTTGACGGGTATGCCCATCAAC 297 Query 24013 ATG 24015 ||| Sbjct 296 ATG 294 >seq266624 Length=731 Score = 107 bits (118), Expect = 9e-19 Identities = 316/482 (66%), Gaps = 4/482 (1%) Strand=Plus/Plus Query 57039 GGGTCTGGCTGTGGTTGCCAAGTACGTAATTCATGAGCCAAGTCAGGCATACGTTTAAGT 57098 || || || |||||||| | | ||| | || | |||||| ||||||||||| || || Sbjct 101 GGATCAGGTTGTGGTTGGTACGAACGAATTTGTTCAGCCAACTCAGGCATACGCTTGAGG 160 Query 57099 TCTGCAATCTTAGCTACGA-GAGATAACGTAATAGTCTGGTCAACCGTATTACCCAATGT 57157 || ||||||||| | | | || | ||| | | || | || | | ||| | || Sbjct 161 TCAGCAATCTTACCCAGAACGATCTGACGAAGCA-TCGGATCCATATCAGGACCAACAGT 219 Query 57158 TTGAACCATGAAGCTCAAATCCTGGGATTTCTGGTTATCAATTTCAGCAGTGTTAATATC 57217 |||| | | | | ||| | || |||||| | ||||| | || ||| ||||| Sbjct 220 CTGAAGAACCATACCAAGATCATTGGCTTTCTGTTCATCAACTGAGGCTGTGGAGATATC 279 Query 57218 AACTTCAATATCGAAGTTACCTTTAAGGTCTTCACGGTTAATCTCTACGTACTGCTCGTT 57277 ||| | | || |||||||| | || ||| || || || ||| ||||| Sbjct 280 AACCTTCAGGTCAAAGTTACCAGCCAACTCAGAACGAGAGATTTCAACAAACTCTTCGTT 339 Query 57278 AGTAATACGTACTACTTCCTTCTCAGATAAGAACACGGCATTCATTGCACAAATCTTAGT 57337 || ||| || ||||||| ||| |||||| ||||||||||| ||||| Sbjct 340 TGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCATTCATTGCGATGATCTTCTC 399 Query 57338 GCCAAT-GTCTGCCATACCCTTAGCTAATCGGCGAAGGATTGCCATCTCACGTTTGGATG 57396 || || |||| |||||| || || | || |||| || |||||| || |||| Sbjct 400 ACCGATCTTCTG-CATACCTTTGGCCAGACGACGAACAATGCTCATCTCCCGGACAGATG 458 Query 57397 CTGCATCAAGTGCACCACGAATACCAGCAGCCACGTCTCCATAAGCTGAACCAGTTACAC 57456 | || || ||||| || ||||||| || ||| ||||| || ||||| | || Sbjct 459 TAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACCATACGCATCACCAGAAATAC 518 Query 57457 CACCAGAGAATGCTTTAACACCAGTTAGGGATTCTGCTTCCTGGTTTTGCATCTGGGTCA 57516 |||| ||||||| ||| || || || || | ||||||||| ||||| || | |||| || Sbjct 519 CACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTCTTGGTTCTGGAGCTGGATCG 578 Query 57517 TT 57518 || Sbjct 579 TT 580 >seq121189 Length=2370 Score = 100 bits (110), Expect = 1e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 11722 TGGCTTCGGCAATTGAGAAGTTCAACATGTC-TCCGTCCTGTGTAGCTATCGTTCACGAT 11780 |||||||||| ||||| ||||||||||| | | ||| || | | | |||||||| Sbjct 1746 TGGCTTCGGCCATTGAAGAGTTCAACATGCCAGTAGATCTG-GTTGGTGTTGTTCACGAC 1804 Query 11781 AAGTCTACATGGGCAAGACGTGCATTATCAGTGTTCAATACCGTAATAGAACCAGGATGG 11840 || || || ||||| ||||||| | || ||||| || || || ||||| || ||| Sbjct 1805 AAATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGAACCGGGTTGG 1864 Query 11841 AAAGGGCATCTTACCCTCGAACTGGTCTATCACGGTCGTAAGAAACTGCATATCCCGGCA 11900 ||||| ||| | || | || || || ||||||||| | || | |||||||| || Sbjct 1865 AAAGGTCATTTAACATTAGAGCTTGTTTATCACGGTAGCGAGGGTATACATATCCCATCA 1924 Query 11901 GGTGCTGGGATAGCTCAAGTATTATTTCA 11929 || ||| || |||||||| ||||||| Sbjct 1925 GGATGTGGAATTGCTCAAGTGCTATTTCA 1953 >seq282581 Length=1216 Score = 89.7 bits (98), Expect = 2e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 28261 GCAGAGTATAAACGTGCTGGGGCATTC-CCATTCACATTCGACTCTGGTACAGCACCTGC 28319 || || ||||||||| | ||| | | || |||| |||||||| || || | ||||| Sbjct 731 GCTGACTATAAACGT-CAGGGTTTTGCACCGTTCATCTTCGACTCAGGAACCGGGCCTGC 673 Query 28320 TGTAAAACAGCTTCGTCACAAACTACTTATGGCTGGTTGTGGTGCTATTAACTTACAGAT 28379 ||| || |||||||| |||| || || |||| |||| | || ||||| ||||| Sbjct 672 TGTGAAGCAGCTTCGATACAAGCTCCTGTTGGCCAAGAATGGTTCGATCAACTTCCAGAT 613 Query 28380 TGATGAGATTGGTTCCAACCTCATTGCCAACGTTGAAGTGCTTAAC 28425 |||||||| ||||||||||| | |||| ||||||||| ||| Sbjct 612 GGATGAGATCGGTTCCAACCTTCAAGGCAACACTGAAGTGCTCAAC 567 Score = 87.8 bits (96), Expect = 8e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 28855 ATGGCTGACCACGAAGAAATTCGTAAGGCTGAAATCTCTCATCGTTACTTCAAAGCTCTT 28914 ||| |||| ||||| ||||| |||||||||||| | |||||||| ||||||||| |||| Sbjct 140 ATGCCTGAACACGAGGAAATCCGTAAGGCTGAATTGTCTCATCGGTACTTCAAATCTCTG 81 Query 28915 AAACTGGCAGGTG 28927 |||||||| |||| Sbjct 80 AAACTGGCTGGTG 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228757304094264