Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq11950 116 2e-21 seq78081 82.4 5e-11 >seq11950 Length=2906 Score = 116 bits (128), Expect = 2e-21 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||| | ||| | || ||||| | |||| ||||||||| ||| Sbjct 1127 AAAATCTGCATTCCACCTCTGAGACGAAGAACTAAATGCAAAGTGGACTCTTTTTGAATG 1068 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || | || || | || || | ||| || || || || |||||||||||| Sbjct 1067 TTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGC 1008 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||| ||||| ||| || || | |||| || | |||||| Sbjct 1007 TGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTT-AGTCTTCACATTTTCAATGGTGTC 949 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 948 GGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTAACAAAGATCTGCAT 889 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || || || |||||||| |||||||| ||||| | || || Sbjct 1325 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 1266 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| |||||||| || |||||||||||||||||| | || | ||||||||||| Sbjct 1265 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 1206 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| || | ||||| || || || |||| || || ||||| Sbjct 1205 ATCTT-GGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAGAGTAATGGTTTT 1147 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || |||||||| Sbjct 1146 GCCAGTGAGGGTCTTGACGAAAATCTGCAT 1117 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| || ||||| ||||||||||||||||| || || | || || | ||| Sbjct 408 ATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGTACGGCCATCTTCAAGTTG 349 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||||||||||| || | |||||| |||||| | || | |||||||| || Sbjct 348 CTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCCTTCTTTATC 298 >seq78081 Length=4256 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| |||||||| || || || || ||| | || || | || ||||||||||| | Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||||||||| |||||| | || | || || || || ||||| || | ||||| Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTT-GGTCTTAACATTT 3093 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||| || | || || || | || || |||||||| || | || || || Sbjct 3094 TCGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACG 3153 Query 33739 AAGATCTGCATA 33750 || ||||||||| Sbjct 3154 AAAATCTGCATA 3165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327547781214720