Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq11950 91.5 3e-13 >seq11950 Length=2906 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| || ||| | || || || |||||| Sbjct 1120 CAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATCTGAC 1179 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || |||||||||||| || || || Sbjct 1180 ACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAG 1239 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||||||||| | || ||||| | || | |||| |||||| || Sbjct 1240 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACAACATC 1299 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || |||||| | || || | ||||| Sbjct 1300 CAGAAGGAATCCACCCTTCACTTGGTCCTGCGTCTTCG 1337 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || ||||| || |||||| | ||||| || || ||||| | Sbjct 669 TTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCAGACACCAT 728 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| ||||||||||| || || |||||| || || || | || Sbjct 729 TGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCT 788 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || ||||| || |||||| | || || || | || || |||| || ||| | || || Sbjct 789 CATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAACATTCAAAA 848 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||||||||||||| | ||| ||||| Sbjct 849 GGAGTCTACTCTTCACTTGGTTCTGAGA 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177450553727336