Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq261671 102 2e-16 seq18390 102 2e-16 seq14098 87.8 4e-12 >seq261671 Length=631 Score = 102 bits (112), Expect = 2e-16 Identities = 236/356 (66%), Gaps = 5/356 (1%) Strand=Plus/Minus Query 299025 TCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGC 299084 ||||| || | || ||| || |||||| || | |||||| ||||| ||||| |||||| Sbjct 600 TCACTTGATATGGGCGCACTGCTTGCTGGCACAAGGTATCGAGGTGACTTTGAGGAACGC 541 Query 299085 ATCGACAATTTGCTAAAAGAACTAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAA 299144 | | | | | | |||||| | | | | | || || || | |||||||||||| Sbjct 540 TTAAAAGCTGTTGTCACAGAACTGGAAGAGCATCCAGATGCTGTTTTATTCATTGATGAA 481 Query 299145 ATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACATGAGCAATATG 299204 || || | || |||| || ||| | || | ||| |||||||| |||| || Sbjct 480 ATCCACACAGTGATTGGCGCAGGTGCTACATCTGGTGGAGCTATGGACGCATCCAATCTG 421 Query 299205 CTTAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAATTGGTGCAACAACATATGATGAA 299264 || || ||||| ||| | || || | ||| || || ||||||||||| | ||| Sbjct 420 CTAAAACCAGCCCTTCAGGGCGGCAAGCTGCGTTGCATGGGGTCAACAACATATAAAGAA 361 Query 299265 TATCGTAAAAATATCG-----AGAAAGATAGTGCATTAACTCGTCGTTTTATGAAAATTG 299319 | ||| | || | | | |||||| |||||||| | |||||||| ||||| | Sbjct 360 TTCCGTCAGCATTTTGTNNNNAAAAAGATCGTGCATTAGCCCGTCGTTTCCAAAAAATAG 301 Query 299320 ACGTAGTTGAGCCGACAATTGATGAAACTCGTGCAATTGTTAATGGTTTGAAACCA 299375 | || ||| ||| ||| ||| || || |||| |||| |||||||| ||| Sbjct 300 ATGTGAATGAACCGTCAACTGAAGATGCTATCAAAATTCTTAAAGGTTTGAAGCCA 245 >seq18390 Length=9200 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 62552 GGTATCCCAGTTGAAAAATATTATTCATCCGAAATTGATAAGTACGCAATAGCTGAATCT 62611 || || |||||||||||||||||| || ||| | ||||| || || || || | | Sbjct 2816 GGAATACCAGTTGAAAAATATTATGCAAGTGAAGTAGATAAATATGCTATGGCAGTTACG 2757 Query 62612 CAATCTAACTTTCCTGATATTATCCAATTGGGTGATGTAACTAAGTGGAGAGAATGGGAT 62671 || ||||| ||| | | ||| ||| | || ||||| ||||| ||| |||||||| || Sbjct 2756 CAGCATAACTATCCGAACACTATTCAACTAGGAGATGTTACTAAATGGCGAGAATGGTAT 2697 Query 62672 ATTGAGTGGGACAAAATAGATTTATTAATGGGTGGTTTCCCATGCCAAGCCTGGTCAGTT 62731 ||||| ||| | || |||||| | |||||| ||||||||||| | || || Sbjct 2696 ATTGATTGGTCAGAGATTGATTTAATCCACGGTGGTAGCCCATGCCAAGGGTTCTCTTTT 2637 Query 62732 GCAGGTAAACA 62742 ||||| ||||| Sbjct 2636 GCAGGAAAACA 2626 >seq14098 Length=52687 Score = 87.8 bits (96), Expect = 4e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 279290 GCATGGAACGTTGGTGAGCTTGATGATATGACGTTACCACCTTGTCATAGCTTTGTGCAA 279349 || |||||||||||||| | ||||||||| | ||| | || |||||| ||| | ||| Sbjct 22125 GCTTGGAACGTTGGTGAATTAGATGATATGGCTTTATCTCCCTGTCATGCCTTGTTCCAA 22184 Query 279350 TTTTGTGTAGTGCAAGGAAAACTAAGCTGTATTCTGCATCAACGCTCCGCTGATCTATTT 279409 |||| ||||| | ||| || | ||| || | ||| | ||| |||| | ||| Sbjct 22185 TTTTATGTAGCAAATGGACAATTGTCTTGTCAGCTTTACCAAAGATCCTGTGATGTGTTT 22244 Query 279410 TTAGGAGTTCCATTTAATATCAGTAGTTACTCACTACTAACTCATATGATTGCACAAATT 279469 |||||| | || |||||||| ||| || | || | || | ||| | ||| || | Sbjct 22245 TTAGGACTGCCTTTTAATATTGCTAGCTATGCTCTGATGACAGAAATGGTGGCAAAAGTA 22304 Query 279470 ACTGGTTTAGATGTTGGTGAATTTATTTGGAATGGTGGTGATTGTCACATTTATAAAAAC 279529 ||||||| | | | |||||| |||||| || || ||| ||| | ||| |||| Sbjct 22305 TGTGGTTTAAAGGCTAAAGAATTTGTTTGGACGGGAGGGGATGTTCATTTGTATTCAAAC 22364 Query 279530 CACGTTGAACAAG 279542 || | || |||| Sbjct 22365 CATTTAGAGCAAG 22377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1111047416783304