Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025458.1 Length=43510 Score E Sequences producing significant alignments: (Bits) Value seq251574 123 7e-24 seq286089 120 8e-23 >seq251574 Length=1356 Score = 123 bits (136), Expect = 7e-24 Identities = 130/167 (78%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 19290 TTACTATCAGCACCAATCCGATTACCATCTACCTTATCAATCATATTTGCA-CCACCGAC 19348 |||||||| | || || | |||||||||||| ||| ||| | | || || ||||| || Sbjct 852 TTACTATCTCCCCCTATTCTATTACCATCTACTTTAGAAAT-AGAATTACAGCCACCAAC 910 Query 19349 AAACGGCTCAACGTACCACTGACCTTCTTTGCGATTTTTTAATATTATCGGCAATATGTA 19408 ||| || |||| ||||| ||||||||||| | || |||||||| || || |||| ||| Sbjct 911 AAAAGGTTCAATATACCATTGACCTTCTTTTCTGTTCTTTAATATGATAGGTAATAAGTA 970 Query 19409 CTTTGCGATTCTAGCCTTGCTTCCCATGTATTTCATTAATCAATTCC 19455 ||| || |||||| || |||||||||||||||| |||| ||| || Sbjct 971 CTTCGCTATTCTATTTTTACTTCCCATGTATTTCA-TAATAAATACC 1016 >seq286089 Length=886 Score = 120 bits (132), Expect = 8e-23 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18798 ATATCTTTCGACCAAATACACTCAAAATCATCTGGTGCATTATATTCACTGATAAATACT 18857 || ||||| ||||||||| | ||| ||||| || ||||| |||||| | ||| ||| Sbjct 256 ATTTCTTTTTCCCAAATACATTTAAAGTCATCAGGAGCATTGTATTCAGAAACAAAGACT 197 Query 18858 TGATGACCTTCTTTAACTTTGTCGCGGCACCATTGCCAAAATTCATCGTGGTTAAAATCG 18917 | ||| |||||||| ||||||| | |||||| | |||||||||| |||||||||||| Sbjct 196 TTATGTCCTTCTTTTACTTTGTTTCTGCACCACTCCCAAAATTCAGTGTGGTTAAAATCA 137 Query 18918 TCTTTGTATTT 18928 ||||||||||| Sbjct 136 TCTTTGTATTT 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138633624839424