Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_025462.1 Length=99730 Score E Sequences producing significant alignments: (Bits) Value seq159884 96.9 2e-15 >seq159884 Length=3827 Score = 96.9 bits (106), Expect = 2e-15 Identities = 173/245 (71%), Gaps = 16/245 (7%) Strand=Plus/Plus Query 19899 TTGATCAGATTG-AGTGGGTTATTAATGAGATTAAA-ACAAACCCAACATCACGAAGATT 19956 ||||||| |||| | ||||| |||||||| || ||| |||| || | ||| | |||| Sbjct 1812 TTGATCA-ATTGCAATGGGTAATTAATGAAATAAAACACAATCCGCAG-TCAAGGCGATT 1869 Query 19957 AATTGTATCAGGTTGGAATCCTCATGATGTTGCAG--ATGTAGAT-------TTACCACC 20007 |||||| || | ||||| ||| || | || | ||| | || |||||||| Sbjct 1870 AATTGTTTCTGCGTGGAACCCTGCGGAAATCGCCGCCATGCAAATCTCTGGATTACCACC 1929 Query 20008 TTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAATTA-TC--TTGCCAGTTGTA 20064 |||||| || |||||||||| | || | |||| ||| | || |||||| | || Sbjct 1930 TTGCCACACGTTATTTCAATTTTACGTCAGCGATGATAACAAACTCAGTTGCCAAGTATA 1989 Query 20065 TCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTTACT 20124 ||||| ||||| || ||||| || ||||| || ||||||||||| ||| || || || Sbjct 1990 CCAACGTAGTGCCGATTTATTTCTGGGTGTACCTTTTAATATTGCCAGTTACGCGTTGCT 2049 Query 20125 TACAC 20129 |||| Sbjct 2050 AACAC 2054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317889075711416